Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 0.0e+00 1122.8 574 100.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.5e-139 498.8 579 51.6
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.0e-117 427.2 443 54.9
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.6e-72 277.3 533 35.1
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.6e-72 277.3 533 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 4.2e-70 270.0 597 32.8
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.3e-65 253.1 572 32.7
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.8e-63 246.9 577 33.4
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.9e-59 234.6 571 30.8
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.5e-56 223.4 633 29.2
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.5e-53 213.8 472 32.8
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.7e-52 209.1 450 34.4
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.5e-48 198.4 491 30.5
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.7e-42 177.2 502 31.3
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 2.4e-41 174.5 506 29.4
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 4.1e-41 173.7 433 31.6
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.0e-40 171.4 505 28.9
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.5e-40 170.2 430 30.5
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 7.6e-40 169.5 508 27.0
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.6e-40 169.5 522 27.8
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 1.0e-39 169.1 432 30.8
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-39 168.7 480 27.9
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.7e-39 168.3 337 33.8
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.7e-39 168.3 372 32.8
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.9e-39 167.5 448 31.0
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 3.8e-39 167.2 428 29.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.4e-38 165.2 451 28.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 3.2e-38 164.1 438 31.5
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 5.5e-38 163.3 407 29.0
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 7.2e-38 162.9 433 30.0
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 9.3e-38 162.5 453 28.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.2e-37 162.2 433 30.7
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.2e-37 162.2 505 28.3
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.6e-37 161.8 513 28.5
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.6e-37 161.8 469 29.2
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.1e-37 161.4 431 30.4
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.7e-37 161.0 430 29.5
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 4.6e-37 160.2 431 28.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 4.6e-37 160.2 450 28.4
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.1e-37 159.8 464 28.7
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 7.9e-37 159.5 426 27.7
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.0e-36 159.1 502 28.1
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.4e-36 158.7 443 28.9
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.4e-36 158.7 528 29.0
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.4e-36 158.7 386 28.8
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.4e-36 158.7 359 29.0
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.4e-36 158.7 378 30.4
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.3e-36 157.9 468 27.6
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.3e-36 157.9 431 27.6
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.3e-36 157.9 472 29.0
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.3e-36 157.9 348 31.6
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 3.0e-36 157.5 391 29.4
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.0e-36 157.5 339 31.9
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 3.9e-36 157.1 435 31.5
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 5.1e-36 156.8 431 28.3
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.1e-36 156.8 518 27.0
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 8.8e-36 156.0 428 28.0
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.5e-35 155.2 371 28.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.5e-35 155.2 357 28.0
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.5e-35 155.2 343 31.8
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.9e-35 154.8 346 30.1
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.9e-35 154.8 433 30.7
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.5e-35 154.5 379 29.6
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.3e-35 154.1 347 33.1
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.3e-35 154.1 387 28.7
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.3e-35 154.1 432 28.5
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 4.3e-35 153.7 343 30.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 5.7e-35 153.3 475 28.8
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 5.7e-35 153.3 437 27.7
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.7e-35 153.3 347 33.4
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 7.4e-35 152.9 433 29.3
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.3e-34 152.1 343 30.0
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.3e-34 152.1 436 27.1
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.2e-34 151.4 434 28.8
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.8e-34 151.0 444 28.6
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.8e-34 151.0 431 27.8
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 3.7e-34 150.6 387 29.5
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 6.3e-34 149.8 334 30.2
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 8.2e-34 149.4 431 30.6
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-33 149.1 451 29.3
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-33 149.1 451 29.3
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.1e-33 149.1 451 29.3
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.1e-33 149.1 450 27.8
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.8e-33 148.3 403 30.0
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.4e-33 147.9 502 26.1
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.1e-33 147.5 451 27.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.1e-33 147.5 344 31.1
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 3.1e-33 147.5 401 29.2
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.1e-33 147.1 413 29.8
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 4.1e-33 147.1 430 28.8
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 4.1e-33 147.1 442 29.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.1e-33 147.1 428 29.0
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 5.3e-33 146.7 436 28.9
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 5.3e-33 146.7 366 32.5
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.9e-33 146.4 414 28.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 6.9e-33 146.4 430 27.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 9.1e-33 146.0 429 28.7
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.2e-32 145.6 458 28.4
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.5e-32 145.2 428 29.2
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.5e-32 145.2 430 27.7
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.5e-32 145.2 432 26.9
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.5e-32 145.2 342 29.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.0e-32 144.8 434 27.0
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.0e-32 144.8 478 28.7
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.6e-32 144.4 363 30.3
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.6e-32 144.4 363 30.3
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.6e-32 144.4 363 30.3
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 4.5e-32 143.7 499 26.7
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 4.5e-32 143.7 339 30.4
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 5.9e-32 143.3 434 27.0
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 5.9e-32 143.3 366 31.1
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 5.9e-32 143.3 455 28.1
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 5.9e-32 143.3 365 30.7
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.0e-31 142.5 529 26.5
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 1.0e-31 142.5 429 28.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.7e-31 141.7 322 29.8
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 2.9e-31 141.0 340 30.9
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 3.8e-31 140.6 344 29.9
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 5.0e-31 140.2 433 27.9
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 6.5e-31 139.8 338 27.8
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.1e-30 139.0 431 28.3
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-30 138.7 319 31.0
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.4e-30 138.7 346 28.0
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 2.5e-30 137.9 366 31.4
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.5e-30 137.9 339 30.1
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 5.5e-30 136.7 339 30.4
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 5.5e-30 136.7 339 30.4
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 5.5e-30 136.7 337 27.0
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.1e-29 134.8 432 26.6
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.1e-29 134.8 316 27.5
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.7e-29 134.4 431 26.5
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.7e-29 133.7 437 28.1
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.7e-29 133.7 343 27.7
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 6.1e-29 133.3 432 27.1
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.0e-28 132.5 455 25.7
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.0e-28 132.5 414 27.1
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.8e-28 131.7 437 28.4
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 3.0e-28 131.0 329 29.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 8.8e-28 129.4 437 25.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-27 129.0 436 25.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.5e-27 128.6 504 26.0
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 2.0e-27 128.3 419 27.2
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.0e-27 128.3 212 34.9
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 7.4e-27 126.3 335 29.6
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.3e-26 123.2 329 27.4
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-23 115.5 401 26.7
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 2.5e-22 111.3 354 25.7
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 3.3e-19 100.9 405 24.7
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 9.7e-19 99.4 290 29.0
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 8.2e-18 96.3 155 36.1
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.0e-15 87.0 79 55.7
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 5.0e-15 87.0 371 24.8
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 3.6e-13 80.9 127 35.4
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 5.2e-12 77.0 93 41.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 8.8e-12 76.3 75 48.0
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.6e-11 74.7 242 28.5
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 2.4e-09 68.2 217 24.9
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.6e-08 65.5 180 24.4
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.0e-08 65.1 180 23.9
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.5e-06 57.0 55 41.8


User provided reference genes

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