Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.8e-78 295.8 149 100.0
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 3.1e-41 172.2 115 72.2
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.2e-40 170.2 112 75.0
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.5e-40 169.9 114 73.7
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 2.6e-40 169.1 112 73.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 2.6e-40 169.1 114 71.1
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 4.4e-40 168.3 115 70.4
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 4.4e-40 168.3 122 68.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 4.4e-40 168.3 112 73.2
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 5.8e-40 167.9 114 73.7
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.8e-40 167.9 114 72.8
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 5.8e-40 167.9 114 71.1
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 5.8e-40 167.9 115 70.4
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 5.8e-40 167.9 115 70.4
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 5.8e-40 167.9 115 70.4
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 7.5e-40 167.5 114 71.1
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 9.9e-40 167.2 115 71.3
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 9.9e-40 167.2 112 72.3
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 1.3e-39 166.8 115 70.4
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 1.3e-39 166.8 114 70.2
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 1.3e-39 166.8 114 71.1
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 1.3e-39 166.8 114 70.2
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 1.7e-39 166.4 115 70.4
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 1.7e-39 166.4 112 71.4
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 1.7e-39 166.4 114 71.1
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 2.2e-39 166.0 116 70.7
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 2.2e-39 166.0 114 71.1
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 2.2e-39 166.0 114 70.2
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 2.9e-39 165.6 116 68.1
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 3.7e-39 165.2 112 72.3
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 3.7e-39 165.2 112 72.3
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 4.9e-39 164.9 112 72.3
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 4.9e-39 164.9 114 70.2
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 6.4e-39 164.5 114 68.4
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 6.4e-39 164.5 115 68.7
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 1.1e-38 163.7 119 68.9
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 1.9e-38 162.9 112 71.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 1.9e-38 162.9 112 70.5
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 2.4e-38 162.5 112 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 3.2e-38 162.2 114 70.2
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 3.2e-38 162.2 112 71.4
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 3.2e-38 162.2 112 71.4
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 3.2e-38 162.2 112 71.4
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 3.2e-38 162.2 112 71.4
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 3.2e-38 162.2 112 71.4
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 3.2e-38 162.2 112 71.4
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 3.2e-38 162.2 114 67.5
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 4.1e-38 161.8 115 68.7
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 4.1e-38 161.8 114 70.2
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 4.1e-38 161.8 115 68.7
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 7.1e-38 161.0 118 68.6
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 9.2e-38 160.6 112 67.9
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 9.2e-38 160.6 112 70.5
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 1.2e-37 160.2 116 69.0
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 1.2e-37 160.2 118 68.6
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 1.2e-37 160.2 118 68.6
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 1.2e-37 160.2 118 68.6
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 1.2e-37 160.2 118 68.6
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 1.2e-37 160.2 118 68.6
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 1.2e-37 160.2 112 70.5
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 1.2e-37 160.2 114 68.4
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 1.2e-37 160.2 114 67.5
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 1.2e-37 160.2 114 69.3
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 1.6e-37 159.8 114 69.3
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 1.6e-37 159.8 114 69.3
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 2.1e-37 159.5 114 71.1
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 2.1e-37 159.5 112 70.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 2.7e-37 159.1 112 69.6
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 2.7e-37 159.1 114 67.5
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 2.7e-37 159.1 114 65.8
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 3.5e-37 158.7 114 69.3
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 3.5e-37 158.7 114 69.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 3.5e-37 158.7 114 69.3
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 4.6e-37 158.3 114 68.4
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 4.6e-37 158.3 114 68.4
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 4.6e-37 158.3 119 63.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 4.6e-37 158.3 114 67.5
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 4.6e-37 158.3 114 67.5
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 6.0e-37 157.9 118 66.9
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 6.0e-37 157.9 118 66.9
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 6.0e-37 157.9 115 68.7
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 6.0e-37 157.9 115 67.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 6.0e-37 157.9 118 66.9
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 6.0e-37 157.9 114 67.5
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 6.0e-37 157.9 115 66.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 6.0e-37 157.9 116 67.2
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 7.8e-37 157.5 119 64.7
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 7.8e-37 157.5 112 70.5
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 7.8e-37 157.5 114 69.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 7.8e-37 157.5 114 69.3
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 1.0e-36 157.1 114 68.4
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.0e-36 157.1 116 64.7
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 1.0e-36 157.1 114 66.7
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 3.0e-36 155.6 119 62.2
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 3.9e-36 155.2 118 65.3
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 5.1e-36 154.8 117 66.7
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 5.1e-36 154.8 121 64.5
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 6.6e-36 154.5 114 66.7
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 6.6e-36 154.5 112 66.1
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 6.6e-36 154.5 118 63.6
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 8.6e-36 154.1 116 63.8
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 8.6e-36 154.1 112 67.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 8.6e-36 154.1 112 67.0
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 1.9e-35 152.9 114 66.7
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 1.9e-35 152.9 112 67.0
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 1.9e-35 152.9 114 66.7
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 2.5e-35 152.5 112 65.2
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 5.6e-35 151.4 112 67.0
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 1.2e-34 150.2 112 64.3
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 4.7e-34 148.3 112 64.3
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 6.2e-34 147.9 114 64.9
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 2.4e-33 146.0 114 62.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 3.1e-33 145.6 114 64.0
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 6.8e-33 144.4 97 73.2
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 2.0e-32 142.9 112 63.4
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 5.8e-32 141.4 100 68.0
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 7.6e-32 141.0 97 71.1
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 1.9e-30 136.3 93 71.0
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 2.4e-30 136.0 112 65.2
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.2e-29 133.7 97 67.0
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 2.1e-29 132.9 97 66.0
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 2.7e-29 132.5 97 67.0
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 4.6e-29 131.7 93 66.7
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 1.0e-28 130.6 101 64.4
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 1.7e-28 129.8 93 69.9
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 2.3e-28 129.4 93 65.6
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 4.3e-27 125.2 132 53.8
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 4.3e-27 125.2 112 54.5
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 1.2e-26 123.6 83 71.1
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 2.4e-25 119.4 97 61.9
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 6.9e-25 117.9 83 69.9
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.6e-24 115.9 87 64.4
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 2.2e-23 112.8 84 65.5
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 3.8e-23 112.1 83 67.5
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 8.4e-23 110.9 132 48.5
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 1.2e-21 107.1 83 63.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 1.2e-21 107.1 99 57.6
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.1e-13 79.7 114 46.5
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.7e-07 60.1 46 63.0
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 5.5e-06 55.1 115 39.1


User provided reference genes

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