Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.1e-63 244.6 127 100.0
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.2e-39 165.2 124 73.4
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 6.4e-32 141.0 124 62.9
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 1.4e-18 96.7 67 65.7
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 4.1e-18 95.1 68 66.2
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 5.3e-18 94.7 68 64.7
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 6.9e-18 94.4 68 67.6
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.2e-17 93.6 69 63.8
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.2e-17 93.6 68 66.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-17 92.8 84 59.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-17 92.8 84 59.5
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-17 92.8 84 59.5
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.0e-17 92.8 84 59.5
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.0e-17 92.8 68 64.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.0e-17 92.8 68 63.2
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.6e-17 92.4 89 53.9
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.6e-17 92.4 89 53.9
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 3.4e-17 92.0 85 56.5
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.4e-17 92.0 69 62.3
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 3.4e-17 92.0 69 62.3
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.4e-17 92.0 92 53.3
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.4e-17 92.0 95 51.6
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 4.5e-17 91.7 66 68.2
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.5e-17 91.7 66 68.2
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 5.9e-17 91.3 68 64.7
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 5.9e-17 91.3 69 65.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 7.6e-17 90.9 85 52.9
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 7.6e-17 90.9 93 52.7
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 7.6e-17 90.9 68 63.2
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 7.6e-17 90.9 97 52.6
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 7.6e-17 90.9 68 61.8
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.0e-16 90.5 65 69.2
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.0e-16 90.5 65 69.2
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.0e-16 90.5 92 52.2
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-16 90.1 93 52.7
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.3e-16 90.1 68 64.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.3e-16 90.1 63 73.0
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.3e-16 90.1 68 63.2
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.7e-16 89.7 70 62.9
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.7e-16 89.7 86 55.8
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.7e-16 89.7 82 56.1
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-16 89.7 68 64.7
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-16 89.7 84 58.3
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.7e-16 89.7 59 71.2
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.9e-16 89.0 97 50.5
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.9e-16 89.0 96 50.0
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 2.9e-16 89.0 86 59.3
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 2.9e-16 89.0 65 63.1
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.9e-16 89.0 77 61.0
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.8e-16 88.6 65 63.1
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 3.8e-16 88.6 68 61.8
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.8e-16 88.6 68 61.8
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 5.0e-16 88.2 96 50.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.0e-16 88.2 76 59.2
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 5.0e-16 88.2 65 63.1
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 5.0e-16 88.2 65 64.6
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 5.0e-16 88.2 93 51.6
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 5.0e-16 88.2 93 51.6
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 5.0e-16 88.2 65 64.6
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 5.0e-16 88.2 83 53.0
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 5.0e-16 88.2 84 57.1
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 5.0e-16 88.2 65 63.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 5.0e-16 88.2 60 68.3
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.0e-16 88.2 68 58.8
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 6.5e-16 87.8 92 51.1
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 6.5e-16 87.8 87 56.3
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 6.5e-16 87.8 59 69.5
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 6.5e-16 87.8 66 62.1
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 6.5e-16 87.8 68 60.3
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 6.5e-16 87.8 65 63.1
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 8.5e-16 87.4 70 61.4
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.5e-16 87.4 77 57.1
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 8.5e-16 87.4 70 62.9
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 8.5e-16 87.4 71 56.3
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.1e-15 87.0 73 58.9
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.4e-15 86.7 97 49.5
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.9e-15 86.3 95 49.5
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-15 86.3 95 49.5
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 1.9e-15 86.3 59 67.8
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.9e-15 86.3 68 57.4
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.9e-15 86.3 65 63.1
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 2.5e-15 85.9 64 64.1
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 2.5e-15 85.9 64 64.1
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 2.5e-15 85.9 81 53.1
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.5e-15 85.9 73 57.5
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.5e-15 85.9 68 61.8
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 2.5e-15 85.9 84 54.8
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.5e-15 85.9 65 61.5
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.5e-15 85.9 71 54.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 3.2e-15 85.5 67 59.7
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.2e-15 85.5 65 61.5
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.2e-15 85.1 90 48.9
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 4.2e-15 85.1 85 52.9
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.2e-15 85.1 74 58.1
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 4.2e-15 85.1 82 50.0
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 5.5e-15 84.7 84 53.6
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 5.5e-15 84.7 83 53.0
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 5.5e-15 84.7 83 53.0
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 5.5e-15 84.7 70 60.0
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 7.2e-15 84.3 100 47.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 7.2e-15 84.3 67 59.7
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 7.2e-15 84.3 77 55.8
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 9.4e-15 84.0 91 49.5
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.2e-14 83.6 81 51.9
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.2e-14 83.6 65 64.6
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.2e-14 83.6 87 55.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.6e-14 83.2 81 50.6
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 2.1e-14 82.8 68 55.9
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 2.1e-14 82.8 88 51.1
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.7e-14 82.4 75 57.3
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.6e-14 82.0 68 57.4
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.6e-14 82.0 68 55.9
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 4.6e-14 81.6 90 50.0
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 4.6e-14 81.6 77 54.5
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 4.6e-14 81.6 77 54.5
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.6e-14 81.6 82 50.0
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 6.1e-14 81.3 70 58.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.1e-14 81.3 65 63.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 6.1e-14 81.3 70 57.1
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 7.9e-14 80.9 79 54.4
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 7.9e-14 80.9 57 64.9
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 7.9e-14 80.9 91 50.5
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.0e-13 80.5 65 58.5
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.0e-13 80.5 65 58.5
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.4e-13 80.1 78 53.8
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.4e-13 80.1 62 62.9
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.4e-13 80.1 65 56.9
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.8e-13 79.7 74 56.8
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 3.0e-13 79.0 67 59.7
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.0e-13 79.0 82 47.6
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 3.9e-13 78.6 65 58.5
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 3.9e-13 78.6 56 69.6
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.8e-13 77.4 70 50.0
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 8.8e-13 77.4 77 49.4
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-12 76.6 74 50.0
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 2.5e-12 75.9 62 59.7
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.5e-12 75.9 63 55.6
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.5e-12 75.9 64 54.7
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 9.7e-12 73.9 63 54.0
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.3e-11 73.6 78 48.7
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.3e-11 73.6 84 50.0
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.8e-11 72.4 79 50.6
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.8e-11 72.4 79 50.6
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.8e-11 72.4 70 47.1
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.1e-10 70.5 58 56.9
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.4e-10 70.1 56 58.9
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.8e-10 69.7 70 55.7
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-09 67.0 57 54.4
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.4e-09 65.5 62 46.8
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.7e-08 63.2 76 46.1
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 1.7e-08 63.2 61 50.8
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.1e-07 60.5 51 56.9
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-07 59.7 123 35.8
Pp3c10_17510 Physcomitrium patens HOM05D004571 ORTHO05D310642 6.1e-06 54.7 41 65.9


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