Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 7.9e-112 407.1 209 100.0
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.3e-82 310.1 206 73.8
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.4e-79 300.1 205 72.7
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.8e-79 299.7 203 72.9
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 3.0e-79 298.9 207 70.0
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 4.0e-79 298.5 203 72.4
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 6.8e-79 297.7 207 70.5
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 8.9e-79 297.4 203 72.4
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 8.9e-79 297.4 203 72.9
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.5e-78 296.6 203 71.9
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.5e-78 296.6 203 72.9
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 3.4e-78 295.4 203 71.9
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 4.4e-78 295.0 203 72.4
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 5.7e-78 294.7 203 71.9
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 9.8e-78 293.9 203 72.4
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 9.8e-78 293.9 203 71.4
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 9.8e-78 293.9 203 71.4
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 9.8e-78 293.9 209 67.9
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.3e-77 293.5 203 71.9
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.3e-77 293.5 203 71.9
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.3e-77 293.5 204 70.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-77 293.1 203 71.4
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.2e-77 292.7 203 70.9
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 2.8e-77 292.4 207 67.6
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 3.7e-77 292.0 207 67.1
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 3.7e-77 292.0 202 70.3
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 4.9e-77 291.6 203 70.4
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.9e-77 291.6 207 66.7
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 8.3e-77 290.8 207 66.7
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 8.3e-77 290.8 207 68.1
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 8.3e-77 290.8 203 69.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 8.3e-77 290.8 204 69.6
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.4e-76 290.0 207 66.7
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.4e-76 289.3 203 69.0
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.4e-76 289.3 203 70.9
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 3.1e-76 288.9 203 68.5
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 4.1e-76 288.5 203 69.5
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 4.1e-76 288.5 203 70.0
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 4.1e-76 288.5 203 68.0
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 5.4e-76 288.1 207 67.1
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 5.4e-76 288.1 203 68.5
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 5.4e-76 288.1 207 67.6
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 9.2e-76 287.3 203 69.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.2e-75 287.0 228 63.6
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.6e-75 286.6 203 67.5
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.6e-75 286.6 203 69.0
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 2.0e-75 286.2 203 69.0
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 3.5e-75 285.4 203 67.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 3.5e-75 285.4 203 67.5
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 3.5e-75 285.4 207 67.6
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.5e-75 285.0 207 68.1
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.0e-74 283.9 203 67.5
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.0e-74 283.9 203 66.5
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.0e-74 283.9 203 66.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.3e-74 283.5 209 65.1
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.3e-74 283.5 203 67.5
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.7e-74 283.1 207 66.2
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.3e-74 282.7 203 66.5
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.9e-74 282.3 207 67.1
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.9e-74 282.0 207 66.2
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 5.0e-74 281.6 207 67.1
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 6.6e-74 281.2 203 66.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 6.6e-74 281.2 203 65.5
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 6.6e-74 281.2 207 64.7
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 8.6e-74 280.8 202 67.3
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.1e-73 280.4 203 67.0
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-73 280.4 203 68.0
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.1e-73 280.4 203 68.0
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.1e-73 280.4 203 66.5
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.5e-73 280.0 203 66.5
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.9e-73 279.6 203 65.5
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.9e-73 279.6 203 65.0
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.9e-73 279.6 207 63.8
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 3.3e-73 278.9 203 67.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 4.3e-73 278.5 203 67.5
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.3e-73 278.5 203 65.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.3e-73 278.5 202 66.8
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 7.3e-73 277.7 203 67.0
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 9.5e-73 277.3 203 66.5
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 9.5e-73 277.3 203 66.5
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.2e-72 276.9 203 66.5
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 1.2e-72 276.9 206 66.5
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.6e-72 276.6 203 64.5
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.8e-72 275.8 203 64.5
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 3.6e-72 275.4 212 63.2
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.4e-71 273.5 203 65.5
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 1.8e-71 273.1 203 65.0
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.2e-70 270.4 204 66.2
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 2.0e-70 269.6 213 61.5
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.0e-70 269.6 203 66.0
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.7e-69 266.5 208 64.4
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.7e-69 265.4 212 61.8
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.9e-68 263.1 184 67.9
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 6.0e-67 258.1 209 60.3
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 6.6e-66 254.6 203 65.0
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 3.3e-65 252.3 213 58.7
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 6.2e-64 248.1 178 68.0
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 4.0e-63 245.4 205 60.5
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 6.8e-63 244.6 208 58.7
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 5.8e-62 241.5 203 61.1
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 4.6e-59 231.9 203 58.1
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 6.2e-56 221.5 184 59.8
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 8.1e-56 221.1 156 67.9
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 5.2e-55 218.4 156 69.2
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.5e-54 216.9 164 62.2
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 3.4e-54 215.7 211 54.5
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 4.9e-53 211.8 164 61.6
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 2.4e-52 209.5 156 64.7
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 3.2e-52 209.1 182 62.1
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.7e-51 206.1 208 54.3
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 4.6e-51 205.3 252 45.2
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 5.2e-47 191.8 186 53.2
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 8.4e-45 184.5 130 68.5
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 2.3e-42 176.4 208 51.4
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.5e-38 163.7 125 63.2
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.5e-38 163.7 125 63.2
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 3.4e-38 162.5 150 56.0
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 3.0e-34 149.4 142 56.3
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 3.6e-32 142.5 223 38.1
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 3.6e-32 142.5 223 38.1
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 5.8e-30 135.2 95 69.5
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.8e-24 116.3 194 38.1
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.5e-17 93.2 65 61.5
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 4.3e-17 92.4 84 56.0
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.1e-15 87.8 52 80.8
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.1e-15 87.8 51 82.4
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.1e-15 87.8 53 81.1
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.5e-14 84.0 100 45.0
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.7e-11 73.2 43 76.7
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.5e-11 72.8 57 61.4
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 4.6e-11 72.4 77 48.1
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 2.8e-08 63.2 37 78.4
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 2.8e-08 63.2 52 57.7
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 4.1e-07 59.3 133 35.3


User provided reference genes

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