Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 5.4e-140 501.1 280 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 1.4e-23 114.4 220 37.7
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 3.1e-18 96.7 196 36.2
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 1.7e-16 90.9 214 34.6
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 1.9e-15 87.4 228 33.3
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 1.9e-15 87.4 231 35.9
Mapoly0001s0294 Marchantia polymorpha HOM05D006223 ORTHO05D009080 7.1e-15 85.5 229 35.8
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 9.3e-15 85.1 226 35.8
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 9.3e-15 85.1 163 35.6
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 1.6e-14 84.3 164 36.0
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 3.5e-14 83.2 229 33.6
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 3.5e-14 83.2 204 33.8
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 7.8e-14 82.0 241 32.0
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 1.7e-13 80.9 190 33.2
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 3.0e-13 80.1 230 34.3
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 3.0e-13 80.1 160 37.5
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 3.0e-13 80.1 226 34.1
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 5.1e-13 79.3 159 36.5
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 6.6e-13 79.0 233 33.9
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 6.6e-13 79.0 131 37.4
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 6.6e-13 79.0 228 30.3
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 6.6e-13 79.0 228 35.1
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 1.5e-12 77.8 178 35.4
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.5e-12 77.8 227 32.2
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 1.9e-12 77.4 233 31.8
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 1.9e-12 77.4 211 34.1
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.9e-12 77.4 204 34.3
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 2.5e-12 77.0 110 41.8
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 4.3e-12 76.3 208 34.6
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 4.3e-12 76.3 232 32.3
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 4.3e-12 76.3 228 32.5
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 5.6e-12 75.9 226 34.1
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 5.6e-12 75.9 182 34.1
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 5.6e-12 75.9 154 36.4
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 9.6e-12 75.1 233 33.0
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 9.6e-12 75.1 234 32.1
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 9.6e-12 75.1 228 32.0
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 1.3e-11 74.7 225 32.0
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 1.6e-11 74.3 228 32.0
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 2.1e-11 73.9 225 33.3
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.1e-11 73.9 229 31.0
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 2.1e-11 73.9 224 32.1
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 2.1e-11 73.9 208 33.7
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 3.6e-11 73.2 233 31.3
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 3.6e-11 73.2 200 32.5
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 4.8e-11 72.8 113 42.5
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 4.8e-11 72.8 232 32.8
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 4.8e-11 72.8 208 33.7
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 8.1e-11 72.0 243 32.5
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 8.1e-11 72.0 225 31.1
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 1.1e-10 71.6 228 32.9
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.1e-10 71.6 228 34.2
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 1.4e-10 71.2 166 33.1
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 1.4e-10 71.2 228 32.5
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 1.8e-10 70.9 229 31.4
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.8e-10 70.9 229 31.4
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 2.4e-10 70.5 229 32.8
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 4.0e-10 69.7 234 31.6
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 4.0e-10 69.7 229 30.6
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 9.0e-10 68.6 231 32.0
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 1.5e-09 67.8 234 30.3
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 2.0e-09 67.4 228 32.5
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 3.4e-09 66.6 160 32.5
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 3.4e-09 66.6 160 33.8
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 4.4e-09 66.2 231 30.3
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 4.4e-09 66.2 228 31.1
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 4.4e-09 66.2 237 29.5
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 5.8e-09 65.9 232 30.2
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 5.8e-09 65.9 217 29.5
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 7.6e-09 65.5 227 29.5
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 9.9e-09 65.1 230 30.4
CBR_g54887 Chara braunii HOM05D006223 ORTHO05D009080 9.9e-09 65.1 173 31.2
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 9.9e-09 65.1 205 29.8
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 1.7e-08 64.3 229 29.7
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 2.9e-08 63.5 236 28.0
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 2.9e-08 63.5 150 34.0
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 3.8e-08 63.2 231 29.4
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 4.9e-08 62.8 230 31.7
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 4.9e-08 62.8 230 31.7
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 6.4e-08 62.4 210 31.0
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 2.4e-07 60.5 228 30.7
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 3.2e-07 60.1 106 39.6
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 4.2e-07 59.7 241 28.2
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 5.4e-07 59.3 225 27.6
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 9.3e-07 58.5 235 27.2
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 9.3e-07 58.5 240 29.2
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 1.2e-06 58.2 193 32.6
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.7e-06 57.0 88 40.9
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 2.7e-06 57.0 214 31.8
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 2.7e-06 57.0 225 28.0
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 6.0e-06 55.8 106 34.9
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 7.9e-06 55.5 229 30.6


User provided reference genes

Program Settings