Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.8e-75 285.8 143 100.0
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.2e-71 273.1 143 95.1
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 2.9e-57 225.3 138 76.8
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 2.5e-56 222.2 139 76.3
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 2.8e-52 208.8 138 68.8
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 7.0e-51 204.1 138 68.1
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.6e-50 203.0 141 69.5
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.6e-50 203.0 141 67.4
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 3.5e-50 201.8 141 68.8
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 3.5e-50 201.8 141 68.1
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 5.9e-50 201.1 141 68.8
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 5.9e-50 201.1 141 67.4
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 5.9e-50 201.1 141 68.1
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.0e-49 200.3 138 68.1
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.0e-49 200.3 141 66.0
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.3e-49 199.9 141 66.7
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.3e-49 199.9 141 68.1
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.3e-49 199.9 141 68.1
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 1.3e-49 199.9 141 68.1
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 1.3e-49 199.9 141 66.7
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.3e-49 199.9 141 67.4
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.2e-49 199.1 141 66.7
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 2.2e-49 199.1 138 68.1
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 66.0
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 2.9e-49 198.7 141 67.4
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 3.8e-49 198.4 141 67.4
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 3.8e-49 198.4 141 67.4
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 3.8e-49 198.4 141 67.4
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 6.5e-49 197.6 141 67.4
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 6.5e-49 197.6 138 66.7
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 6.5e-49 197.6 141 66.0
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 8.5e-49 197.2 141 64.5
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 8.5e-49 197.2 141 64.5
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 8.5e-49 197.2 141 66.0
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 8.5e-49 197.2 141 65.2
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 1.1e-48 196.8 138 68.1
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 1.1e-48 196.8 141 63.8
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 1.5e-48 196.4 141 65.2
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.5e-48 196.4 138 65.2
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.5e-48 196.4 138 68.1
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 1.5e-48 196.4 138 65.9
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.5e-48 196.4 141 66.0
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 1.9e-48 196.1 138 67.4
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 1.9e-48 196.1 141 66.7
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 1.9e-48 196.1 141 66.7
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.9e-48 196.1 141 66.0
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.9e-48 196.1 138 66.7
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 2.5e-48 195.7 141 66.0
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 2.5e-48 195.7 138 65.9
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 2.5e-48 195.7 141 63.8
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 3.2e-48 195.3 138 66.7
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.2e-48 195.3 138 66.7
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.2e-48 195.3 138 66.7
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.2e-48 195.3 138 66.7
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 3.2e-48 195.3 138 65.2
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 3.2e-48 195.3 141 66.0
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 4.2e-48 194.9 138 66.7
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 4.2e-48 194.9 138 66.7
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 4.2e-48 194.9 141 66.0
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 4.2e-48 194.9 138 68.1
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 4.2e-48 194.9 141 66.7
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 5.5e-48 194.5 141 64.5
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 5.5e-48 194.5 138 67.4
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 5.5e-48 194.5 138 67.4
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 5.5e-48 194.5 138 67.4
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 5.5e-48 194.5 141 63.8
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 5.5e-48 194.5 141 63.8
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 7.2e-48 194.1 141 64.5
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 7.2e-48 194.1 141 66.0
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 7.2e-48 194.1 138 66.7
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 9.4e-48 193.7 138 65.9
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 9.4e-48 193.7 141 63.8
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 9.4e-48 193.7 138 66.7
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 9.4e-48 193.7 141 66.0
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.2e-47 193.4 138 65.9
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.2e-47 193.4 138 65.9
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 1.2e-47 193.4 138 65.9
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.2e-47 193.4 141 65.2
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 1.2e-47 193.4 138 65.2
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 1.6e-47 193.0 141 63.8
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 1.6e-47 193.0 141 63.1
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.6e-47 193.0 141 63.8
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 1.6e-47 193.0 141 63.8
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.1e-47 192.6 141 64.5
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 2.1e-47 192.6 138 66.7
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 2.1e-47 192.6 141 63.8
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 2.7e-47 192.2 138 64.5
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 2.7e-47 192.2 141 65.2
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 2.7e-47 192.2 141 65.2
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 2.7e-47 192.2 141 63.8
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 3.6e-47 191.8 141 62.4
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 3.6e-47 191.8 141 63.8
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 3.6e-47 191.8 138 65.9
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 4.7e-47 191.4 138 65.2
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 4.7e-47 191.4 138 65.2
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 4.7e-47 191.4 141 63.1
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 6.1e-47 191.0 138 66.7
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 6.1e-47 191.0 138 63.0
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 8.0e-47 190.7 135 65.9
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 8.0e-47 190.7 141 63.8
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.0e-46 190.3 148 61.5
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.0e-46 190.3 148 61.5
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.4e-46 189.9 138 64.5
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 2.3e-46 189.1 141 64.5
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 5.2e-46 188.0 138 63.8
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 5.2e-46 188.0 138 63.8
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 5.2e-46 188.0 141 63.1
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 5.2e-46 188.0 138 64.5
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 6.8e-46 187.6 138 63.8
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 6.8e-46 187.6 141 63.1
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 1.2e-45 186.8 138 64.5
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 2.6e-45 185.7 138 63.8
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 7.5e-45 184.1 141 62.4
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.7e-44 183.0 151 58.3
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 3.7e-44 181.8 138 62.3
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 8.3e-44 180.6 169 53.3
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 2.9e-41 172.2 141 60.3
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 2.2e-36 156.0 174 46.6
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 7.0e-35 151.0 137 57.7
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 2.0e-34 149.4 135 57.8
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 4.5e-34 148.3 138 52.2
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 1.0e-33 147.1 141 54.6
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 2.3e-33 146.0 117 62.4
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 5.0e-33 144.8 133 52.6
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 6.6e-33 144.4 254 35.8
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 3.2e-27 125.6 133 46.6
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 7.0e-27 124.4 302 30.5
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.6e-26 123.2 78 74.4
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 1.3e-25 120.2 81 69.1
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 3.3e-24 115.5 86 66.3
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 1.5e-21 106.7 68 73.5
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.6e-21 105.9 74 64.9
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 7.5e-21 104.4 80 62.5
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 2.2e-20 102.8 70 67.1
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 3.7e-20 102.1 70 70.0
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 3.7e-20 102.1 70 70.0
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 6.0e-18 94.7 77 62.3
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 3.0e-17 92.4 68 60.3
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.1e-16 90.5 63 65.1
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 6.2e-15 84.7 64 57.8
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 2.9e-12 75.9 151 37.7
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 6.4e-12 74.7 71 57.7
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 4.1e-11 72.0 77 48.1
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 3.0e-09 65.9 45 64.4
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 1.5e-08 63.5 98 35.7
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 3.3e-08 62.4 54 59.3


User provided reference genes

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