Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.4e-75 286.2 143 100.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.7e-36 156.4 103 75.7
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 7.0e-35 151.0 103 71.8
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.0e-34 149.4 125 62.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 3.5e-34 148.7 118 64.4
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 5.9e-34 147.9 112 65.2
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 7.8e-34 147.5 115 65.2
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.0e-33 147.1 112 67.0
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.3e-33 146.7 112 67.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.3e-33 146.0 112 67.9
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.3e-33 146.0 112 67.0
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.9e-33 145.6 103 68.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 2.9e-33 145.6 115 65.2
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.9e-33 145.6 103 68.9
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.8e-33 145.2 112 65.2
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.8e-33 145.2 106 67.9
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.8e-33 145.2 103 68.9
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.8e-33 145.2 118 62.7
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 5.0e-33 144.8 103 68.9
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 5.0e-33 144.8 122 62.3
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.0e-33 144.8 112 66.1
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 5.0e-33 144.8 103 68.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 5.0e-33 144.8 103 68.9
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 6.6e-33 144.4 103 68.9
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 6.6e-33 144.4 103 68.0
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.6e-33 144.4 112 65.2
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 6.6e-33 144.4 112 65.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.6e-33 144.4 103 67.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.6e-33 144.4 102 69.6
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 6.6e-33 144.4 106 67.9
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 8.6e-33 144.1 103 68.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 8.6e-33 144.1 112 65.2
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 8.6e-33 144.1 112 66.1
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 8.6e-33 144.1 103 68.0
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.1e-32 143.7 103 68.9
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.1e-32 143.7 103 68.0
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.1e-32 143.7 113 64.6
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-32 143.3 117 62.4
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.5e-32 143.3 112 65.2
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.5e-32 143.3 112 65.2
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.5e-32 143.3 103 68.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-32 143.3 103 66.0
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-32 143.3 103 66.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.9e-32 142.9 115 65.2
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.5e-32 142.5 103 67.0
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-32 142.5 103 67.0
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-32 142.5 103 67.0
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-32 142.5 103 67.0
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 2.5e-32 142.5 98 71.4
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 2.5e-32 142.5 119 60.5
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.5e-32 142.5 103 67.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 3.3e-32 142.1 115 63.5
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.3e-32 142.1 110 66.4
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 3.3e-32 142.1 103 68.0
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 3.3e-32 142.1 103 67.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.3e-32 142.1 104 68.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 4.3e-32 141.7 117 61.5
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.3e-32 141.7 117 61.5
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 4.3e-32 141.7 103 67.0
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 4.3e-32 141.7 104 69.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 4.3e-32 141.7 119 62.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 4.3e-32 141.7 112 64.3
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 5.6e-32 141.4 103 67.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 5.6e-32 141.4 112 63.4
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 5.6e-32 141.4 103 67.0
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 5.6e-32 141.4 103 66.0
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.6e-32 141.4 98 69.4
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.3e-32 141.0 112 64.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 9.5e-32 140.6 103 65.0
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.2e-31 140.2 112 64.3
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.6e-31 139.8 103 64.1
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.6e-31 139.8 101 67.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.6e-31 139.8 110 64.5
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.6e-31 139.8 103 66.0
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.1e-31 139.4 116 63.8
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.1e-31 139.4 112 62.5
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.1e-31 139.4 100 68.0
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-31 139.0 112 62.5
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.8e-31 139.0 103 66.0
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.8e-31 139.0 104 67.3
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.6e-31 138.7 108 63.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 3.6e-31 138.7 112 62.5
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 3.6e-31 138.7 112 61.6
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 3.6e-31 138.7 112 61.6
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 4.7e-31 138.3 105 65.7
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 4.7e-31 138.3 115 60.9
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 6.1e-31 137.9 106 63.2
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 8.0e-31 137.5 112 60.7
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.4e-30 136.7 116 59.5
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.4e-30 136.7 107 62.6
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.4e-30 136.7 103 65.0
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.8e-30 136.3 115 60.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.3e-30 136.0 103 62.1
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.3e-30 136.0 103 64.1
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.3e-30 136.0 115 60.0
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 3.0e-30 135.6 117 59.8
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 3.0e-30 135.6 103 64.1
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.0e-30 135.6 112 61.6
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 4.0e-30 135.2 112 62.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 4.0e-30 135.2 115 60.0
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 5.2e-30 134.8 103 64.1
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 8.9e-30 134.0 103 62.1
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 8.9e-30 134.0 116 61.2
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 8.9e-30 134.0 112 61.6
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 8.9e-30 134.0 112 60.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.2e-29 133.7 112 59.8
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 1.2e-29 133.7 117 58.1
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.5e-29 133.3 104 64.4
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.5e-29 133.3 110 58.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.5e-29 133.3 103 62.1
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-29 132.9 112 59.8
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 2.0e-29 132.9 106 61.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.6e-29 132.5 112 59.8
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.6e-29 132.5 112 59.8
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 2.6e-29 132.5 112 59.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 3.4e-29 132.1 110 59.1
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.4e-29 132.1 106 60.4
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.4e-29 131.7 120 57.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.8e-29 131.3 112 58.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.8e-29 131.3 112 58.9
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 5.8e-29 131.3 112 59.8
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 5.8e-29 131.3 112 59.8
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 5.8e-29 131.3 112 58.9
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.8e-29 131.3 110 59.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 5.8e-29 131.3 89 70.8
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 5.8e-29 131.3 105 61.9
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 5.8e-29 131.3 120 58.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 7.5e-29 131.0 103 61.2
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 7.5e-29 131.0 126 56.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.8e-29 130.6 120 57.5
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.8e-29 130.6 120 57.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.3e-28 130.2 103 60.2
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.7e-28 129.8 112 58.9
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-28 129.4 123 57.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 2.9e-28 129.0 112 58.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-28 129.0 123 57.7
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.9e-28 128.3 112 57.1
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.9e-28 128.3 113 59.3
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-27 127.1 105 60.0
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 6.0e-26 121.3 83 68.7
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.0e-25 119.0 166 42.8
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.9e-25 118.6 97 62.9
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 8.6e-25 117.5 79 72.2
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.1e-24 117.1 81 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 6.2e-23 111.3 90 63.3
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.8e-22 109.8 88 65.9
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 1.7e-20 103.2 117 51.3
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.9e-20 101.7 80 63.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.9e-20 101.7 76 68.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.9e-17 92.0 81 60.5
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-15 86.3 83 49.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 8.1e-15 84.3 109 45.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-14 83.6 74 52.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.3e-14 82.8 103 40.8
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.1e-11 73.9 89 42.7
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.1e-11 71.2 83 44.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-10 68.9 62 51.6
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 6.6e-09 64.7 45 66.7
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 8.6e-09 64.3 103 38.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.3e-08 62.4 48 62.5
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.3e-08 62.4 48 62.5


User provided reference genes

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