Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 1.8e-279 965.3 492 100.0
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.6e-115 420.6 492 48.4
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 1.0e-93 348.2 501 44.5
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 1.3e-93 347.8 494 43.5
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 1.8e-93 347.4 501 44.5
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 5.1e-93 345.9 499 42.9
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 6.7e-93 345.5 496 44.8
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 1.9e-92 344.0 496 43.5
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.5e-92 343.6 500 44.0
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 2.5e-92 343.6 501 44.5
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 4.3e-92 342.8 496 42.3
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 5.7e-92 342.4 502 44.6
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 9.6e-92 341.7 492 41.7
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 1.6e-91 340.9 496 42.7
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 2.8e-91 340.1 491 42.8
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 2.8e-91 340.1 486 42.8
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 2.8e-91 340.1 494 41.9
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 1.4e-90 337.8 489 42.3
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 4.0e-90 336.3 494 42.5
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 6.9e-90 335.5 495 41.0
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 9.0e-90 335.1 493 42.0
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 1.5e-89 334.3 494 42.9
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 1.5e-89 334.3 494 42.7
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 2.0e-89 334.0 502 42.8
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 2.6e-89 333.6 499 41.9
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 5.8e-89 332.4 500 42.0
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.3e-88 331.3 503 42.1
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.2e-88 330.5 491 42.2
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 3.8e-88 329.7 496 42.1
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 6.5e-88 328.9 496 42.5
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 8.4e-88 328.6 492 41.3
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 8.4e-88 328.6 500 42.4
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 8.4e-88 328.6 489 41.9
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.1e-87 328.2 492 41.5
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 1.1e-87 328.2 523 41.3
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.9e-87 327.4 490 42.0
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 2.5e-87 327.0 499 41.9
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.2e-87 326.2 491 42.0
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 4.2e-87 326.2 506 41.3
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 7.1e-87 325.5 524 39.7
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 7.1e-87 325.5 490 41.2
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 7.1e-87 325.5 506 40.9
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.2e-86 324.7 494 41.9
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.2e-86 324.7 489 41.1
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 1.6e-86 324.3 483 41.0
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 2.1e-86 323.9 502 42.4
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 2.7e-86 323.6 494 42.1
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 4.6e-86 322.8 494 41.3
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 6.1e-86 322.4 499 41.1
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 1.0e-85 321.6 495 41.2
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.3e-85 321.2 498 41.2
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 1.8e-85 320.9 487 40.7
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 3.0e-85 320.1 493 40.8
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 3.9e-85 319.7 498 41.8
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 5.1e-85 319.3 495 41.4
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 5.1e-85 319.3 495 41.4
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 5.1e-85 319.3 495 41.4
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 8.7e-85 318.5 491 40.9
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 1.5e-84 317.8 495 41.8
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.5e-84 317.8 490 41.6
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.5e-84 317.8 495 42.2
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.9e-84 317.4 495 41.0
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.9e-84 317.4 495 41.0
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 4.3e-84 316.2 490 40.4
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 4.3e-84 316.2 489 40.3
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 5.7e-84 315.8 495 41.0
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 5.7e-84 315.8 491 39.9
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 7.4e-84 315.5 495 41.4
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 7.4e-84 315.5 495 40.8
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.6e-83 314.3 492 40.7
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 3.7e-83 313.2 495 40.2
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 6.3e-83 312.4 495 42.0
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 1.1e-82 311.6 498 41.2
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.1e-82 311.6 487 41.3
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 1.8e-82 310.8 489 41.3
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 1.5e-81 307.8 492 40.9
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 3.4e-81 306.6 504 39.9
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 5.9e-81 305.8 499 40.3
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 8.5e-80 302.0 497 40.6
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 1.4e-79 301.2 497 40.2
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 2.5e-79 300.4 504 38.9
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 5.5e-79 299.3 486 38.7
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 9.4e-79 298.5 498 39.2
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 4.6e-78 296.2 491 40.5
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 1.8e-77 294.3 498 38.4
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 2.5e-76 290.4 494 40.1
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 9.7e-76 288.5 372 45.2
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.3e-75 288.1 498 40.0
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.2e-75 287.3 486 39.3
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 2.2e-75 287.3 496 38.1
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 2.8e-75 287.0 374 46.0
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 2.8e-75 287.0 374 46.0
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 3.7e-75 286.6 439 41.7
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 5.3e-74 282.7 546 36.3
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 4.5e-73 279.6 486 40.9
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 5.9e-73 279.3 492 37.8
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 7.7e-73 278.9 372 44.4
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.0e-72 278.5 489 39.1
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.0e-72 278.5 376 43.1
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 2.9e-72 276.9 486 37.9
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 3.3e-68 263.5 442 39.1
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 2.6e-65 253.8 398 40.7
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 1.7e-64 251.1 595 33.4
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 3.8e-64 250.0 346 43.9
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 5.2e-61 239.6 517 35.2
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.7e-59 234.6 457 36.5
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 2.8e-59 233.8 436 36.0
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 6.3e-59 232.6 361 42.9
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 2.4e-58 230.7 369 41.2
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.1e-55 221.9 503 35.0
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.2e-54 218.4 309 43.4
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 4.7e-54 216.5 307 42.3
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 4.4e-52 209.9 465 33.5
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 7.5e-52 209.1 481 32.8
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 9.8e-52 208.8 452 34.7
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 6.3e-51 206.1 391 36.1
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 1.8e-50 204.5 465 32.9
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 1.3e-48 198.4 376 35.9
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 2.2e-48 197.6 467 34.3
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 3.8e-48 196.8 376 35.4
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 5.5e-47 193.0 461 33.4
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.2e-46 191.8 427 33.3
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 2.7e-46 190.7 471 31.8
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.0e-45 188.7 467 32.1
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 9.8e-44 182.2 475 32.2
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.1e-42 176.8 480 29.6
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 4.1e-42 176.8 467 31.5
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 4.5e-41 173.3 237 44.7
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 1.0e-37 162.2 233 41.6
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.8e-37 161.4 237 42.6
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.3e-37 161.0 324 36.7
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 4.0e-37 160.2 259 39.8
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 7.8e-33 146.0 219 42.9
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.6e-30 137.1 255 36.1
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.8e-29 134.8 467 28.3
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 3.6e-22 110.5 176 38.1
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 9.2e-18 95.9 208 33.2
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 7.6e-12 76.3 56 62.5
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 6.4e-11 73.2 319 24.8
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.1e-10 70.5 40 70.0
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 1.0e-08 65.9 90 41.1
PRCOL_00005117 Prasinoderma coloniale HOM05D001663 ORTHO05D005717 2.5e-07 61.2 496 23.0


User provided reference genes

Program Settings