Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.4e-55 217.6 104 100.0
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.5e-47 192.6 103 90.3
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.2e-46 188.7 101 88.1
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 7.1e-37 157.1 102 66.7
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.5e-34 148.7 105 66.7
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.1e-32 141.7 98 64.3
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 9.0e-32 140.2 100 63.0
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-31 139.8 98 63.3
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.5e-31 139.4 97 63.9
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 1.5e-31 139.4 100 64.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.6e-31 138.7 97 62.9
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.4e-31 138.3 106 59.4
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 4.5e-31 137.9 101 61.4
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 4.5e-31 137.9 102 64.7
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 4.5e-31 137.9 97 61.9
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 5.8e-31 137.5 97 61.9
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 7.6e-31 137.1 98 63.3
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 7.6e-31 137.1 102 60.8
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 7.6e-31 137.1 101 62.4
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.0e-30 136.7 102 63.7
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.0e-30 136.7 101 62.4
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.0e-30 136.7 101 62.4
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.0e-30 136.7 99 60.6
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.3e-30 136.3 97 60.8
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.3e-30 136.3 97 60.8
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.3e-30 136.3 99 60.6
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.3e-30 136.3 105 61.0
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.3e-30 136.3 100 62.0
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.3e-30 136.3 107 61.7
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 1.3e-30 136.3 99 61.6
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.3e-30 136.3 99 61.6
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.7e-30 136.0 99 61.6
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.7e-30 136.0 99 63.6
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.7e-30 136.0 98 60.2
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 2.9e-30 135.2 102 62.7
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.9e-30 135.2 102 60.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 3.8e-30 134.8 102 60.8
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 3.8e-30 134.8 102 59.8
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 3.8e-30 134.8 97 62.9
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.8e-30 134.8 102 60.8
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.8e-30 134.8 102 59.8
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.8e-30 134.8 101 61.4
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 3.8e-30 134.8 101 61.4
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 4.9e-30 134.4 102 59.8
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.9e-30 134.4 102 59.8
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 4.9e-30 134.4 102 62.7
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 6.5e-30 134.0 102 59.8
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 6.5e-30 134.0 102 59.8
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 6.5e-30 134.0 102 59.8
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 6.5e-30 134.0 96 62.5
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 8.4e-30 133.7 98 60.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 8.4e-30 133.7 100 64.0
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 8.4e-30 133.7 97 63.9
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 59.8
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 60.8
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 8.4e-30 133.7 102 60.8
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.1e-29 133.3 102 60.8
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-29 133.3 102 59.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-29 133.3 102 59.8
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.1e-29 133.3 101 62.4
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.1e-29 133.3 97 60.8
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.4e-29 132.9 101 59.4
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.4e-29 132.9 102 59.8
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.9e-29 132.5 102 59.8
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.9e-29 132.5 100 59.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.9e-29 132.5 100 61.0
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.9e-29 132.5 97 59.8
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.9e-29 132.5 106 59.4
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 2.5e-29 132.1 102 59.8
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.5e-29 132.1 101 59.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 3.2e-29 131.7 101 59.4
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 3.2e-29 131.7 102 58.8
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.2e-29 131.7 107 57.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.2e-29 131.3 101 58.4
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 4.2e-29 131.3 102 59.8
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 4.2e-29 131.3 103 59.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 4.2e-29 131.3 105 58.1
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 7.1e-29 130.6 102 58.8
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 9.3e-29 130.2 105 57.1
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.3e-29 130.2 100 58.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 9.3e-29 130.2 102 57.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 9.3e-29 130.2 97 58.8
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 9.3e-29 130.2 98 59.2
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.2e-28 129.8 102 57.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.6e-28 129.4 97 57.7
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.1e-28 129.0 102 59.8
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-28 129.0 102 59.8
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-28 129.0 102 59.8
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.7e-28 128.6 97 60.8
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.7e-28 128.6 97 60.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 3.5e-28 128.3 106 57.5
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.6e-28 127.9 102 58.8
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.6e-28 127.9 102 58.8
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 4.6e-28 127.9 99 59.6
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 6.0e-28 127.5 102 57.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 6.0e-28 127.5 106 57.5
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.0e-28 127.5 104 59.6
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.9e-28 127.1 99 56.6
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 7.9e-28 127.1 99 56.6
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 7.9e-28 127.1 97 59.8
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.0e-27 126.7 98 59.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.0e-27 126.7 98 56.1
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 1.0e-27 126.7 97 58.8
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.3e-27 126.3 102 54.9
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.3e-27 126.3 101 55.4
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.8e-27 125.9 102 57.8
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.8e-27 125.9 102 56.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.8e-27 125.9 100 57.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.8e-27 125.9 102 55.9
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.8e-27 125.9 102 55.9
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.3e-27 125.6 102 57.8
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.3e-27 125.6 98 56.1
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.3e-27 125.6 97 59.8
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.3e-27 125.6 97 59.8
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.3e-27 125.6 102 57.8
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.3e-27 125.6 100 58.0
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 3.0e-27 125.2 99 56.6
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 3.0e-27 125.2 102 56.9
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 3.0e-27 125.2 102 56.9
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.0e-27 125.2 102 56.9
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 3.9e-27 124.8 99 56.6
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 5.1e-27 124.4 97 57.7
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 5.1e-27 124.4 96 58.3
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 6.7e-27 124.0 99 56.6
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 6.7e-27 124.0 102 55.9
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.7e-27 124.0 99 55.6
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.7e-27 124.0 99 55.6
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 6.7e-27 124.0 98 57.1
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 6.7e-27 124.0 102 54.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 8.7e-27 123.6 105 55.2
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 8.7e-27 123.6 96 57.3
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 8.7e-27 123.6 99 55.6
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.1e-26 123.2 105 54.3
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.1e-26 123.2 87 59.8
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.5e-26 122.9 87 60.9
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.5e-26 122.9 100 56.0
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.5e-26 122.9 97 56.7
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 3.3e-26 121.7 97 54.6
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.3e-25 119.8 102 53.9
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.8e-25 118.6 95 51.6
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.3e-24 114.4 161 39.1
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 5.8e-23 110.9 69 68.1
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.1e-21 106.7 73 61.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 5.5e-21 104.4 93 48.4
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.6e-20 102.8 84 57.1
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.0e-19 98.6 63 63.5
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 5.1e-19 97.8 75 57.3
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.6e-17 92.8 90 44.4
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.7e-17 91.7 70 55.7
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.0e-14 83.6 70 55.7
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.9e-14 82.0 64 62.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.9e-13 79.3 67 55.2
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 2.5e-13 79.0 57 68.4
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 5.5e-13 77.8 60 63.3
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 4.6e-12 74.7 60 60.0
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 4.6e-12 74.7 57 66.7
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 6.1e-12 74.3 60 60.0
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 6.1e-12 74.3 63 60.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.8e-11 72.8 62 56.5
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 7.4e-10 67.4 91 35.2
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.3e-09 66.6 54 53.7
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.3e-09 66.6 48 62.5
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.7e-09 65.1 53 49.1
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.8e-09 64.7 54 57.4
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 8.2e-09 63.9 59 52.5
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.4e-08 63.2 58 48.3
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 3.4e-07 58.5 41 56.1


User provided reference genes

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