Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 0.0e+00 1455.7 834 100.0
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 0.0e+00 1075.1 856 76.8
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.3e-261 906.7 852 69.2
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 2.7e-134 483.8 416 62.0
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 5.0e-125 453.0 460 53.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 8.6e-125 452.2 428 55.4
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.5e-124 451.4 516 49.0
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 2.5e-124 450.7 502 50.4
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 4.3e-124 449.9 505 49.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.1e-123 447.6 427 54.6
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 3.6e-123 446.8 430 55.3
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.6e-123 446.8 434 54.8
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 4.7e-123 446.4 498 50.4
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 6.2e-123 446.0 430 54.4
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 8.0e-123 445.7 441 54.6
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.4e-122 444.9 427 56.2
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 2.3e-122 444.1 436 54.1
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 5.2e-122 443.0 435 53.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.2e-122 443.0 497 49.3
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 6.8e-122 442.6 427 53.6
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 6.8e-122 442.6 430 55.3
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 8.9e-122 442.2 440 53.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.0e-121 441.0 504 48.8
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 3.4e-121 440.3 427 54.8
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 3.4e-121 440.3 498 49.8
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.4e-121 440.3 505 48.9
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 5.8e-121 439.5 427 54.6
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.8e-121 439.5 421 54.9
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 7.5e-121 439.1 429 53.6
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.3e-120 438.3 422 54.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-120 438.3 421 55.1
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.2e-120 437.6 427 53.9
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 3.7e-120 436.8 430 54.4
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 4.9e-120 436.4 504 48.4
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 4.9e-120 436.4 428 54.4
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 6.4e-120 436.0 534 47.2
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 6.4e-120 436.0 428 54.9
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 8.3e-120 435.6 431 52.9
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.1e-119 435.3 434 53.5
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.4e-119 434.9 435 52.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.4e-119 434.9 429 54.5
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.9e-119 434.5 432 54.2
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.9e-119 434.5 518 48.3
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.9e-119 434.5 429 53.1
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.4e-119 434.1 430 54.2
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.4e-119 434.1 428 53.3
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 4.1e-119 433.3 427 53.6
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 7.0e-119 432.6 506 47.8
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 9.2e-119 432.2 444 54.3
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 9.2e-119 432.2 432 53.9
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.2e-118 431.8 502 49.2
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.2e-118 431.8 431 52.4
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.2e-118 431.8 428 55.1
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.6e-118 431.4 428 55.1
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.5e-118 430.3 427 52.5
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 3.5e-118 430.3 432 53.5
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 4.6e-118 429.9 441 52.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.0e-117 428.7 427 52.9
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.3e-117 427.6 513 48.1
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.3e-117 427.6 430 51.6
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 5.0e-117 426.4 442 52.0
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 6.6e-117 426.0 442 54.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.6e-117 426.0 427 52.5
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.6e-117 426.0 519 47.6
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 6.6e-117 426.0 447 51.2
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 8.6e-117 425.6 447 52.3
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.9e-116 424.5 422 53.6
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.9e-116 424.5 430 53.3
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.3e-116 423.3 422 52.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 4.3e-116 423.3 433 51.7
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 5.6e-116 422.9 436 51.8
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 9.5e-116 422.2 436 52.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 9.5e-116 422.2 438 52.5
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 9.5e-116 422.2 452 51.5
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.2e-115 421.8 427 53.9
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.6e-115 421.4 445 51.9
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.6e-115 421.4 440 50.9
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.6e-115 421.4 513 47.6
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.6e-115 421.4 433 51.5
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 6.2e-115 419.5 437 52.6
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 6.2e-115 419.5 438 52.3
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 2.3e-114 417.5 430 52.3
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 2.3e-114 417.5 436 52.3
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 6.8e-114 416.0 430 54.4
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 8.9e-114 415.6 427 52.2
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 8.9e-114 415.6 432 51.4
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.6e-113 414.1 431 52.9
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.6e-113 414.1 442 52.5
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.6e-113 414.1 435 50.3
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 4.4e-113 413.3 513 47.2
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 1.7e-112 411.4 432 50.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.9e-112 410.6 418 53.3
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 2.9e-112 410.6 435 52.2
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 3.2e-111 407.1 485 47.8
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 5.4e-111 406.4 370 54.9
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.7e-110 404.1 482 49.0
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-109 401.4 516 45.9
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 3.9e-109 400.2 383 54.0
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.5e-108 398.3 455 49.2
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.5e-108 397.5 436 52.5
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 9.5e-108 395.6 382 53.4
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 9.5e-108 395.6 422 49.1
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-107 395.2 383 53.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 6.8e-106 389.4 380 51.3
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 6.8e-106 389.4 869 34.9
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.0e-105 387.9 367 55.3
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.7e-104 383.6 393 53.2
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 4.1e-103 380.2 445 48.1
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 5.4e-103 379.8 439 49.2
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 7.8e-102 375.9 313 63.3
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.7e-101 374.8 411 52.8
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.7e-101 374.8 602 40.5
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 3.9e-101 373.6 467 48.0
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 6.6e-101 372.9 380 50.0
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 9.6e-100 369.0 382 50.3
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 6.2e-99 366.3 429 47.6
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 3.8e-96 357.1 394 51.0
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 8.4e-96 355.9 442 47.5
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.3e-93 347.8 453 47.0
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 6.6e-93 346.3 382 48.7
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.9e-92 344.7 367 49.9
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.3e-92 344.0 583 37.7
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.8e-91 340.9 433 44.6
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 4.4e-89 333.6 439 42.4
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.1e-87 328.9 438 45.7
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 9.3e-87 325.9 372 48.4
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.2e-86 325.5 420 44.8
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 2.8e-83 314.3 323 52.6
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 3.4e-81 307.4 666 34.5
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.9e-80 303.5 417 42.9
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 5.5e-79 300.1 335 49.9
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 6.9e-74 283.1 422 42.2
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 5.8e-73 280.0 353 45.3
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.5e-72 276.6 222 62.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.1e-71 275.8 301 49.2
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.1e-66 257.3 209 60.8
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.1e-62 245.0 348 40.5
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.6e-62 244.2 167 68.9
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.6e-62 244.2 267 47.9
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 4.8e-59 233.8 433 36.5
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.3e-56 225.7 374 36.1
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 2.7e-54 218.0 190 57.9
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 2.9e-48 198.0 413 34.6
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 6.5e-48 196.8 346 37.6
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 4.7e-46 190.7 219 49.8
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.5e-44 185.7 214 48.6
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 5.3e-42 177.2 216 45.4
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.6e-41 175.6 213 46.5
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.3e-36 157.9 295 36.3
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 4.8e-35 154.1 182 45.6
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 6.3e-35 153.7 207 41.5
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 6.8e-29 133.7 178 43.3
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.4e-28 131.3 102 62.7
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 3.8e-24 117.9 85 62.4
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 8.8e-21 106.7 172 40.7
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 7.0e-18 97.1 63 69.8
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 9.2e-18 96.7 152 40.1
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 3.5e-17 94.7 65 69.2
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.9e-16 91.7 125 44.8
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-13 82.8 64 64.1
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.5e-12 79.3 54 63.0
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 4.4e-12 77.8 220 30.5
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-08 66.2 58 53.4
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 3.9e-08 64.7 59 54.2
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.6e-08 63.5 47 59.6
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 6.2e-06 57.4 53 49.1


User provided reference genes

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