Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 4.1e-75 284.6 143 100.0
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 7.2e-48 194.1 143 71.3
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 2.7e-47 192.2 143 69.2
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.0e-46 190.3 143 68.5
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.0e-46 190.3 136 68.4
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 1.4e-46 189.9 143 69.2
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 1.4e-46 189.9 143 69.2
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.4e-46 189.9 136 70.6
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.4e-46 189.9 135 69.6
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.4e-46 189.9 143 72.0
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.3e-46 189.1 140 67.1
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 3.0e-46 188.7 141 71.6
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 5.2e-46 188.0 143 66.4
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 5.2e-46 188.0 143 65.7
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.2e-45 186.8 143 67.1
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.2e-45 186.8 143 67.1
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.2e-45 186.8 143 71.3
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 1.5e-45 186.4 136 69.1
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 1.5e-45 186.4 143 67.8
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 1.5e-45 186.4 136 68.4
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.5e-45 186.4 143 67.8
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.0e-45 186.0 143 66.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 2.0e-45 186.0 131 73.3
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 2.6e-45 185.7 136 68.4
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 3.4e-45 185.3 143 66.4
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 4.4e-45 184.9 143 65.0
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 5.7e-45 184.5 143 67.8
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 7.5e-45 184.1 136 66.9
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 9.8e-45 183.7 143 66.4
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.3e-44 183.3 136 67.6
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.3e-44 183.3 143 67.1
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.8e-44 182.2 143 63.6
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 2.8e-44 182.2 143 63.6
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 2.8e-44 182.2 143 66.4
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 2.8e-44 182.2 143 65.7
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 3.7e-44 181.8 143 66.4
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 3.7e-44 181.8 138 68.8
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 4.8e-44 181.4 134 67.9
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 4.8e-44 181.4 143 65.0
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 4.8e-44 181.4 131 68.7
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 4.8e-44 181.4 143 67.8
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 6.3e-44 181.0 135 68.9
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 6.3e-44 181.0 138 65.2
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 1.1e-43 180.3 143 65.0
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.1e-43 180.3 143 67.8
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.4e-43 179.9 143 65.7
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 2.4e-43 179.1 136 66.9
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 2.4e-43 179.1 136 66.9
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 3.1e-43 178.7 136 67.6
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 5.4e-43 177.9 143 65.7
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 5.4e-43 177.9 143 65.7
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 5.4e-43 177.9 143 62.2
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 5.4e-43 177.9 143 66.4
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 7.0e-43 177.6 136 66.2
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 7.0e-43 177.6 138 62.3
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 9.1e-43 177.2 143 62.2
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 9.1e-43 177.2 143 67.8
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 1.2e-42 176.8 143 62.2
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.6e-42 176.4 138 66.7
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 2.0e-42 176.0 136 67.6
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.0e-42 176.0 138 66.7
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.7e-42 175.6 138 65.2
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 3.5e-42 175.3 136 66.9
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 4.5e-42 174.9 143 64.3
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 4.5e-42 174.9 143 66.4
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 5.9e-42 174.5 143 65.0
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 5.9e-42 174.5 138 66.7
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 5.9e-42 174.5 138 66.7
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 7.7e-42 174.1 143 61.5
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 7.7e-42 174.1 143 61.5
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 7.7e-42 174.1 143 61.5
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.0e-41 173.7 136 64.7
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 1.0e-41 173.7 146 65.1
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.7e-41 172.9 136 64.7
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 1.7e-41 172.9 143 62.2
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 2.3e-41 172.6 136 64.0
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 3.8e-41 171.8 143 60.8
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 5.0e-41 171.4 131 65.6
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 5.0e-41 171.4 131 69.5
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.5e-40 169.9 143 60.8
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 1.9e-40 169.5 130 68.5
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 2.5e-40 169.1 143 62.9
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 4.2e-40 168.3 144 63.9
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 4.2e-40 168.3 136 63.2
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.5e-40 167.9 136 62.5
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 9.5e-40 167.2 118 67.8
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.2e-39 166.8 136 62.5
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 1.6e-39 166.4 118 67.8
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.6e-39 166.4 143 63.6
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.1e-39 166.0 143 60.8
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 2.8e-39 165.6 105 74.3
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 2.8e-39 165.6 136 62.5
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 3.6e-39 165.2 139 63.3
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 3.6e-39 165.2 139 63.3
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 3.6e-39 165.2 139 63.3
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 3.6e-39 165.2 139 63.3
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 3.6e-39 165.2 143 60.8
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 3.6e-39 165.2 122 71.3
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 4.7e-39 164.9 136 62.5
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 6.1e-39 164.5 106 72.6
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 6.1e-39 164.5 142 59.9
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 6.1e-39 164.5 142 59.9
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 8.0e-39 164.1 131 64.1
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.4e-38 163.3 106 72.6
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.4e-38 163.3 106 72.6
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-38 163.3 110 70.9
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 1.4e-38 163.3 110 70.9
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 1.4e-38 163.3 110 70.9
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 1.4e-38 163.3 106 72.6
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 1.8e-38 162.9 134 61.9
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 2.3e-38 162.5 105 73.3
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 3.0e-38 162.2 105 72.4
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 3.0e-38 162.2 134 64.2
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 4.0e-38 161.8 110 70.0
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 4.0e-38 161.8 110 70.0
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 5.2e-38 161.4 105 72.4
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 4.4e-37 158.3 133 62.4
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 1.3e-36 156.8 111 66.7
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.7e-36 156.4 117 64.1
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 4.9e-36 154.8 98 72.4
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 9.5e-32 140.6 116 65.5
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 2.8e-31 139.0 94 66.0
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 6.1e-31 137.9 123 59.3
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 7.5e-29 131.0 91 63.7
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 3.2e-27 125.6 75 74.7
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 9.2e-27 124.0 120 58.3
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 6.6e-25 117.9 131 55.0
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 6.2e-23 111.3 101 55.4
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.1e-22 110.5 102 52.9
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 8.9e-22 107.5 120 49.2
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.3e-20 103.6 68 67.6
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 1.7e-20 103.2 106 48.1
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 8.3e-20 100.9 71 73.2
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 2.1e-18 96.3 138 45.7
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 3.5e-18 95.5 62 69.4
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 8.6e-17 90.9 83 61.4
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 2.1e-15 86.3 140 41.4
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 3.6e-15 85.5 75 58.7
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.1e-14 84.0 50 70.0
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.4e-14 83.6 81 58.0
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 2.3e-14 82.8 80 62.5
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 2.6e-13 79.3 69 58.0
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 7.1e-11 71.2 59 62.7
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 9.2e-11 70.9 98 38.8
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 2.3e-09 66.2 57 50.9
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 6.6e-09 64.7 74 47.3
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 5.6e-08 61.6 81 44.4


User provided reference genes

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