Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 6.8e-93 345.1 216 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.8e-54 216.9 174 67.2
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.3e-54 215.7 168 67.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 8.8e-48 195.3 172 62.2
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.1e-47 194.9 162 64.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.5e-42 177.2 171 58.5
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 5.1e-40 169.5 151 60.9
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.0e-39 167.5 169 53.8
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.0e-39 167.5 150 58.7
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.2e-38 164.1 152 58.6
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.2e-38 164.1 167 56.3
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.3e-38 162.5 145 59.3
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 8.2e-38 162.2 155 58.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.2e-38 162.2 155 58.7
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.4e-37 161.4 144 61.1
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.4e-37 161.4 155 58.7
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.4e-37 161.4 155 58.7
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.8e-37 161.0 149 59.1
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.8e-37 161.0 176 53.4
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 2.4e-37 160.6 166 54.2
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.3e-37 159.5 155 58.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 7.0e-37 159.1 148 60.8
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 9.1e-37 158.7 178 53.4
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-36 158.3 146 60.3
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.2e-36 158.3 166 53.6
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.2e-36 158.3 155 56.1
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.5e-36 157.9 150 58.7
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.6e-36 157.1 173 52.6
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.5e-36 156.8 180 50.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.5e-36 156.8 175 53.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.5e-36 156.8 152 56.6
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 3.5e-36 156.8 182 50.5
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 4.5e-36 156.4 171 53.8
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 7.7e-36 155.6 163 55.8
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.0e-35 155.2 145 58.6
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.7e-35 154.5 202 46.5
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.2e-35 154.1 183 51.9
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.9e-35 153.7 193 49.7
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 5.0e-35 152.9 152 56.6
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 6.5e-35 152.5 164 53.7
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.1e-34 151.8 142 59.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.1e-34 151.8 143 53.8
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.4e-34 151.4 168 52.4
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.9e-34 151.0 186 51.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.9e-34 151.0 147 57.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.9e-34 151.0 157 54.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.9e-34 151.0 145 56.6
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 3.2e-34 150.2 151 56.3
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 3.2e-34 150.2 151 56.3
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 3.2e-34 150.2 151 56.3
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 3.2e-34 150.2 180 48.3
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.2e-34 149.8 176 51.1
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.2e-34 149.8 159 54.1
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 4.2e-34 149.8 148 54.7
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 4.2e-34 149.8 181 53.0
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 4.2e-34 149.8 181 53.0
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 5.5e-34 149.4 157 52.9
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 5.5e-34 149.4 180 46.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 9.4e-34 148.7 199 45.7
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 1.2e-33 148.3 151 55.6
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.2e-33 148.3 171 52.0
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-33 148.3 143 52.4
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.2e-33 148.3 164 53.7
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.6e-33 147.9 173 52.0
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.6e-33 147.9 155 52.9
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 2.1e-33 147.5 145 54.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 2.7e-33 147.1 177 52.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.7e-33 147.1 175 52.0
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.7e-33 147.1 150 54.0
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.7e-33 147.1 150 54.0
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.6e-33 146.7 144 55.6
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.7e-33 146.4 189 49.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 4.7e-33 146.4 158 50.6
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 6.1e-33 146.0 186 48.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.1e-33 146.0 167 52.7
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.1e-33 146.0 105 69.5
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 6.1e-33 146.0 176 50.0
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 8.0e-33 145.6 170 48.8
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 8.0e-33 145.6 147 55.8
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 8.0e-33 145.6 179 51.4
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.8e-32 144.4 147 53.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.8e-32 144.4 189 49.7
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.8e-32 144.4 186 50.0
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.3e-32 144.1 189 48.7
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.0e-32 143.7 176 46.0
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.9e-32 143.3 167 52.1
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.2e-32 142.9 154 54.5
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.2e-32 142.9 154 53.9
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.7e-32 142.5 154 53.2
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 8.8e-32 142.1 175 50.9
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 8.8e-32 142.1 173 49.7
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.5e-31 141.4 178 50.0
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.6e-31 140.6 174 50.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.4e-31 139.8 147 54.4
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 9.7e-31 138.7 153 51.6
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.7e-30 137.9 173 49.1
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 4.8e-30 136.3 184 45.1
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 8.2e-30 135.6 182 48.9
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.4e-29 134.0 154 51.9
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.1e-29 133.7 111 63.1
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.3e-29 132.9 154 51.9
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.0e-28 131.0 106 66.0
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.5e-28 130.2 109 63.3
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-28 130.2 105 64.8
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.5e-28 129.8 131 54.2
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 5.9e-28 129.4 101 65.3
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.9e-28 129.4 153 49.7
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 5.9e-28 129.4 185 48.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.0e-27 128.6 118 60.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.2e-27 127.5 115 59.1
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 2.9e-27 127.1 106 64.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 8.5e-27 125.6 103 64.1
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.2e-25 121.7 108 60.2
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.6e-25 121.3 177 44.6
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.7e-25 119.8 106 58.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 1.4e-24 118.2 159 46.5
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.0e-23 114.4 96 61.5
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 3.7e-22 110.2 90 62.2
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 4.8e-22 109.8 165 42.4
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 6.3e-22 109.4 139 47.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 4.1e-21 106.7 125 49.6
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 7.0e-21 105.9 173 41.0
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.2e-20 105.1 80 67.5
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.6e-20 104.8 161 46.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 3.5e-20 103.6 112 54.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.5e-20 103.6 171 40.4
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 5.9e-20 102.8 92 59.8
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.0e-19 102.1 142 42.3
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.0e-19 102.1 142 42.3
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.2e-19 100.9 110 52.7
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.9e-19 100.5 109 52.3
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 8.5e-19 99.0 108 54.6
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 8.5e-19 99.0 106 51.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.5e-18 98.2 106 51.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.9e-18 97.8 95 58.9
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 2.5e-18 97.4 187 41.2
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.5e-18 97.4 107 53.3
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.5e-18 97.4 107 53.3
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 2.5e-18 97.4 104 51.0
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 3.2e-18 97.1 114 50.9
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.2e-18 95.9 134 47.0
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.2e-17 95.1 110 49.1
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 4.7e-17 93.2 107 49.5
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.8e-16 91.3 102 45.1
Pp3c13_11540 Physcomitrium patens HOM05D004041 ORTHO05D004564 8.8e-16 89.0 54 87.0
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 7.5e-15 85.9 105 43.8
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.5e-15 85.9 98 49.0
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.8e-15 85.5 103 50.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.7e-14 84.7 108 47.2
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-14 84.7 98 48.0
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 3.1e-13 80.5 172 33.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.1e-13 79.0 98 49.0
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 5.9e-12 76.3 102 42.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.3e-11 75.1 110 43.6
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.9e-10 71.2 67 55.2
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.2e-10 70.1 127 38.6
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 2.1e-09 67.8 52 65.4
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 6.8e-08 62.8 111 40.5
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-07 62.0 53 58.5
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 7.5e-07 59.3 62 50.0
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.3e-06 58.5 81 43.2


User provided reference genes

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