Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 0.0e+00 1612.4 954 100.0
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 1.2e-167 594.7 1047 44.9
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 2.6e-162 577.0 945 43.4
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 1.1e-157 561.6 962 49.0
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 3.5e-154 550.1 1110 37.1
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 9.4e-152 542.0 1028 46.8
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 9.4e-152 542.0 1028 46.8
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 1.2e-149 535.0 625 50.4
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 2.0e-149 534.3 1022 46.6
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 3.4e-149 533.5 1017 46.8
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 9.8e-149 531.9 1032 45.8
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.7e-148 531.2 1002 43.6
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 7.7e-146 522.3 1024 46.0
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 2.2e-145 520.8 1046 46.0
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 2.2e-145 520.8 980 48.0
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 6.5e-145 519.2 975 38.6
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 8.5e-145 518.8 1025 45.6
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 1.5e-144 518.1 1062 44.3
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 1.5e-144 518.1 1022 46.2
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.9e-144 517.7 1029 45.2
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 2.5e-144 517.3 1025 45.5
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 3.2e-144 516.9 1024 45.4
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 7.2e-144 515.8 989 46.4
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.6e-143 514.6 1041 45.1
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.6e-143 514.6 1025 45.6
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 2.1e-143 514.2 1033 44.8
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 3.6e-143 513.5 981 46.5
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 4.7e-143 513.1 1034 45.8
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 4.7e-143 513.1 1047 44.9
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 6.1e-143 512.7 1031 45.2
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 2.3e-142 510.8 1026 45.6
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 6.8e-142 509.2 1109 43.0
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 5.7e-141 506.1 1028 45.2
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 7.5e-141 505.8 1109 42.9
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 9.8e-141 505.4 1024 44.5
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.7e-140 504.6 1020 45.5
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.7e-140 504.6 1109 42.9
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.7e-140 504.6 1032 45.3
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 2.8e-140 503.8 1022 45.3
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 3.7e-140 503.4 1095 43.1
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 3.7e-140 503.4 1029 42.7
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 3.7e-140 503.4 1067 44.0
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 8.3e-140 502.3 1029 45.1
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.4e-139 501.5 1043 44.7
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 2.4e-139 500.7 1034 43.6
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.2e-138 498.4 1028 44.8
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 7.7e-138 495.7 1038 44.8
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 1.0e-137 495.4 1051 44.6
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 6.6e-137 492.7 1052 43.8
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 6.6e-137 492.7 485 49.9
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 6.6e-137 492.7 1042 44.0
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 1.5e-136 491.5 1044 43.7
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.5e-136 491.5 1095 42.4
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 3.3e-136 490.3 1038 44.4
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 3.3e-136 490.3 482 50.8
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 4.2e-136 490.0 992 45.5
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 7.2e-136 489.2 1101 43.2
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.2e-135 488.4 1095 42.6
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 1.6e-135 488.0 1099 42.8
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 2.8e-135 487.3 1088 43.0
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 4.7e-135 486.5 1066 42.3
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 1.4e-134 485.0 1075 41.7
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.4e-134 485.0 482 50.2
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 5.2e-134 483.0 855 44.6
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 6.8e-134 482.6 1011 41.5
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.2e-133 481.9 482 49.6
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 1.2e-133 481.9 1078 41.7
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 1.5e-133 481.5 1028 44.5
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 2.6e-133 480.7 1035 42.1
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 3.4e-133 480.3 1028 44.5
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 5.7e-133 479.6 483 50.7
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 7.5e-133 479.2 483 49.9
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.7e-132 478.0 1035 41.8
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 2.2e-132 477.6 485 48.9
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 2.2e-132 477.6 1039 43.8
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 2.9e-132 477.2 1058 42.1
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.7e-132 476.9 1060 43.1
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 1.4e-131 474.9 1057 41.7
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.8e-131 474.6 480 49.6
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 1.8e-131 474.6 480 50.2
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 4.1e-131 473.4 1022 44.3
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 2.7e-130 470.7 1041 38.4
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 3.5e-130 470.3 481 49.9
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 1.3e-129 468.4 1062 42.5
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.3e-129 467.6 761 47.3
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.9e-129 466.8 1062 42.4
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 6.6e-129 466.1 1035 41.3
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 8.6e-129 465.7 484 48.1
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 1.1e-128 465.3 1055 43.4
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 5.6e-128 463.0 483 49.3
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 7.3e-128 462.6 479 48.4
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 9.5e-128 462.2 1065 40.1
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.7e-124 451.4 1058 41.9
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 2.2e-124 451.1 483 48.0
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.4e-123 448.4 1020 43.1
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.4e-123 448.4 1067 41.6
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 9.2e-123 445.7 1057 39.8
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.6e-122 444.9 1058 41.7
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 3.9e-121 440.3 1022 41.2
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 6.6e-121 439.5 425 51.1
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 1.9e-120 438.0 448 49.8
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 1.8e-118 431.4 446 48.0
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 8.3e-116 422.5 540 43.9
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 4.0e-110 403.7 479 44.9
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 2.7e-106 391.0 944 39.8
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 2.4e-86 324.7 439 41.7
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.3e-81 308.9 604 46.5
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 1.7e-76 292.0 251 53.4
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 6.3e-71 273.5 899 38.5
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.0e-68 266.2 782 43.7
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 4.8e-63 247.3 198 57.1
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 1.3e-60 239.2 205 50.2
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 4.5e-53 214.2 901 25.7
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 1.1e-51 209.5 770 43.0
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 5.7e-48 197.2 430 41.6
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 2.2e-47 195.3 480 41.7
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 4.7e-34 151.0 706 38.8
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 1.8e-33 149.1 912 24.9
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 1.8e-33 149.1 251 38.2
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 5.5e-27 127.5 125 50.4
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 9.4e-27 126.7 125 50.4
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.2e-26 126.3 323 30.0
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 2.1e-26 125.6 133 43.6
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.0e-25 121.3 326 31.3
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 3.5e-21 108.2 132 43.9
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.7e-21 107.1 88 55.7
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.3e-20 106.3 107 44.9
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 2.9e-20 105.1 88 58.0
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 2.9e-20 105.1 183 37.7
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 3.8e-20 104.8 88 56.8
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 1.5e-19 102.8 239 28.9
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 1.2e-18 99.8 99 53.5
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.8e-17 95.9 71 56.3
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 5.2e-17 94.4 108 50.0
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 5.2e-17 94.4 93 46.2
CSS0044835 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D017532 3.4e-16 91.7 78 52.6
CAN.G1823.3 Capsicum annuum HOM05D004966 ORTHO05D017532 2.2e-15 89.0 88 48.9
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.9e-15 88.6 89 46.1
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 1.2e-13 83.2 61 59.0
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.8e-13 80.5 111 42.3
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 7.3e-11 73.9 130 36.2
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 2.3e-09 68.9 65 49.2
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 7.5e-08 63.9 114 35.1
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 5.4e-06 57.8 49 44.9


User provided reference genes

Program Settings