Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.4e-57 225.3 115 100.0
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 1.6e-45 186.0 112 81.2
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.1e-45 185.7 114 78.9
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 6.6e-44 180.6 114 74.6
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.1e-43 179.9 113 77.0
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.5e-43 179.5 113 76.1
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.5e-43 179.5 114 73.7
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.5e-43 179.5 113 73.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.5e-43 179.5 113 74.3
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.9e-43 179.1 114 73.7
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.9e-43 179.1 114 73.7
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.3e-43 178.3 113 75.2
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 4.3e-43 177.9 114 72.8
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 4.3e-43 177.9 114 72.8
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.3e-43 177.9 114 73.7
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 4.3e-43 177.9 113 75.2
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 5.6e-43 177.6 113 74.3
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 5.6e-43 177.6 114 74.6
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 5.6e-43 177.6 113 76.1
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 5.6e-43 177.6 113 73.5
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 5.6e-43 177.6 114 73.7
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.3e-43 177.2 114 72.8
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 9.6e-43 176.8 113 74.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 9.6e-43 176.8 113 74.3
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 9.6e-43 176.8 113 74.3
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 9.6e-43 176.8 114 72.8
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.3e-42 176.4 113 76.1
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.3e-42 176.4 112 74.1
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.3e-42 176.4 114 72.8
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.3e-42 176.4 113 73.5
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 1.6e-42 176.0 114 73.7
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.6e-42 176.0 113 74.3
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.6e-42 176.0 114 73.7
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.6e-42 176.0 114 73.7
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.6e-42 176.0 114 73.7
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.6e-42 176.0 113 74.3
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.1e-42 175.6 115 73.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 2.1e-42 175.6 114 71.9
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.1e-42 175.6 114 72.8
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 2.1e-42 175.6 114 73.7
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.1e-42 175.6 113 72.6
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.8e-42 175.3 114 72.8
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.8e-42 175.3 113 75.2
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.8e-42 175.3 113 73.5
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 2.8e-42 175.3 109 77.1
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 3.6e-42 174.9 113 73.5
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 3.6e-42 174.9 113 73.5
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 3.6e-42 174.9 113 73.5
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 3.6e-42 174.9 113 73.5
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 3.6e-42 174.9 113 74.3
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 3.6e-42 174.9 110 75.5
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 3.6e-42 174.9 113 72.6
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 4.8e-42 174.5 113 72.6
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 4.8e-42 174.5 113 72.6
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 4.8e-42 174.5 113 72.6
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 4.8e-42 174.5 113 72.6
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 4.8e-42 174.5 114 72.8
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 4.8e-42 174.5 114 71.9
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 6.2e-42 174.1 113 73.5
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 6.2e-42 174.1 113 73.5
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 6.2e-42 174.1 113 73.5
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 6.2e-42 174.1 114 72.8
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 6.2e-42 174.1 113 72.6
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 8.1e-42 173.7 113 72.6
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 8.1e-42 173.7 114 71.1
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 8.1e-42 173.7 114 74.6
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 1.1e-41 173.3 114 71.9
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.1e-41 173.3 113 70.8
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-41 173.3 114 73.7
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.1e-41 173.3 113 71.7
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.4e-41 172.9 113 72.6
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.4e-41 172.9 113 73.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-41 172.9 114 71.9
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-41 172.9 114 71.9
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.4e-41 172.9 114 71.9
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.4e-41 172.9 114 73.7
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.4e-41 172.9 114 72.8
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.8e-41 172.6 113 73.5
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.8e-41 172.6 114 72.8
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.8e-41 172.6 113 72.6
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.4e-41 172.2 114 74.6
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 2.4e-41 172.2 113 72.6
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.4e-41 172.2 114 72.8
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 2.4e-41 172.2 114 71.9
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.4e-41 172.2 113 71.7
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.1e-41 171.8 114 74.6
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.1e-41 171.8 114 74.6
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.1e-41 171.8 114 71.1
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 3.1e-41 171.8 114 71.1
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 3.1e-41 171.8 114 73.7
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 3.1e-41 171.8 113 73.5
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 4.0e-41 171.4 113 71.7
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 4.0e-41 171.4 113 72.6
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 4.0e-41 171.4 114 71.9
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 4.0e-41 171.4 114 74.6
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 4.0e-41 171.4 114 73.7
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 4.0e-41 171.4 114 71.9
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 5.3e-41 171.0 113 72.6
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 5.3e-41 171.0 113 71.7
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 6.9e-41 170.6 114 71.1
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 6.9e-41 170.6 114 71.9
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 6.9e-41 170.6 113 71.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 9.0e-41 170.2 114 71.1
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.2e-40 169.9 113 70.8
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.2e-40 169.9 113 70.8
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.2e-40 169.9 114 71.9
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.5e-40 169.5 114 71.1
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 2.0e-40 169.1 113 70.8
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 2.0e-40 169.1 115 72.2
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.6e-40 168.7 114 70.2
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.6e-40 168.7 110 75.5
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 4.5e-40 167.9 113 71.7
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.8e-40 167.5 114 70.2
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.8e-40 167.5 114 70.2
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 5.8e-40 167.5 114 70.2
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 5.8e-40 167.5 110 72.7
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 5.8e-40 167.5 113 71.7
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 5.8e-40 167.5 113 71.7
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.3e-39 166.4 109 71.6
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.7e-39 166.0 113 70.8
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 2.2e-39 165.6 113 69.9
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 2.2e-39 165.6 115 69.6
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 2.2e-39 165.6 113 70.8
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 1.9e-38 162.5 115 68.7
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.2e-38 161.4 113 69.0
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 5.5e-38 161.0 105 73.3
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.1e-37 159.1 105 70.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 5.1e-36 154.5 149 55.0
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 5.1e-36 154.5 123 64.2
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.5e-35 152.1 107 66.4
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.3e-35 151.8 101 72.3
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 4.8e-34 147.9 89 77.5
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.6e-32 142.1 88 75.0
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.3e-31 139.8 115 64.3
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 4.9e-31 137.9 197 41.6
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.1e-30 136.7 106 60.4
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 2.1e-29 132.5 85 80.0
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.6e-29 131.3 73 90.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.0e-28 130.2 72 84.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 2.3e-28 129.0 73 86.3
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 3.0e-28 128.6 86 69.8
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.3e-26 123.2 85 65.9
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.6e-26 122.9 67 86.6
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.4e-25 119.8 85 64.7
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 4.1e-25 118.2 109 56.0
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.2e-24 116.7 85 62.4
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.5e-24 116.3 105 57.1
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.5e-24 116.3 105 57.1
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.5e-24 116.3 86 62.8
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.0e-24 115.9 99 57.6
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.4e-22 109.8 78 62.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 6.1e-21 104.4 83 61.4
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 8.2e-18 94.0 69 60.9
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.4e-17 93.2 69 60.9
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.4e-17 93.2 70 64.3
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.0e-16 89.4 107 51.4
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 3.4e-16 88.6 67 61.2
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 3.6e-13 78.6 51 76.5
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 8.5e-07 57.4 48 52.1


User provided reference genes

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