Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 4011.8 2033 100.0
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1780.0 2058 47.9
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1504.2 2027 43.0
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 0.0e+00 1299.3 2144 37.6
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 1287.7 2019 38.4
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1276.2 2024 38.1
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 1230.7 2021 37.9
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 1219.9 2014 36.7
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 1219.1 2024 36.9
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 1219.1 2034 36.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 1216.8 2040 36.4
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 1213.7 2021 37.4
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1207.6 2022 36.4
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 1199.9 2049 36.5
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1199.5 2021 36.8
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 1197.6 2020 36.3
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 1197.2 2025 36.0
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 1196.8 2039 36.9
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1196.8 2049 36.2
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1195.3 2046 36.0
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1194.1 1901 37.4
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 1190.6 2018 36.4
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1189.5 2025 36.3
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1188.7 2036 36.0
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1188.3 2019 35.9
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1187.6 2018 36.9
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1186.8 2014 36.0
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 1185.6 2046 36.4
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 1180.6 2046 36.1
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1179.9 2021 35.8
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 1176.8 2020 36.1
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 1175.6 2058 35.7
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1173.7 2025 36.4
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1167.5 2021 36.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1166.0 2017 35.9
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1164.4 2029 35.7
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1162.1 2018 35.8
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1161.0 1895 37.2
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1158.7 2039 35.7
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1157.1 2042 36.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1156.0 2017 36.1
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1155.6 2023 36.2
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1155.2 2020 36.4
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1153.7 2038 35.4
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1152.1 2021 36.7
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1151.7 2019 36.1
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1150.6 2020 37.0
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1149.8 2019 36.4
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1146.7 2009 35.0
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1145.2 2011 34.7
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1144.4 2014 36.0
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1141.7 2034 35.9
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1139.8 2021 36.7
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 1138.3 2118 35.3
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1135.9 2021 36.7
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1135.2 2007 34.8
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1134.8 2026 36.4
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 1129.8 2042 35.5
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1129.8 2015 34.1
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1128.2 2053 35.5
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1124.8 2013 34.7
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1123.6 2018 34.3
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1123.6 2053 35.5
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1122.5 2040 35.4
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1116.7 2052 35.3
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1111.3 2256 33.2
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1107.4 2061 35.5
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1104.7 2058 34.4
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1102.4 2064 33.8
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1085.1 2218 33.4
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1077.0 2003 35.0
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 6.8e-309 1065.1 2325 31.4
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 8.9e-309 1064.7 2010 34.7
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 4.4e-308 1062.4 2207 32.9
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 1.9e-306 1057.0 1641 37.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.2e-301 1038.9 2026 34.1
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 7.6e-300 1035.0 2035 33.2
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 8.9e-293 1011.5 2013 33.2
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.5e-287 993.4 2011 33.0
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.6e-287 992.3 1902 34.0
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 1.8e-285 987.3 1897 33.7
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 3.9e-264 916.4 1896 32.6
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 5.1e-248 862.8 1190 41.3
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 2.6e-247 860.5 1297 38.4
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.3e-222 778.5 992 44.0
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 3.2e-218 763.8 1309 36.1
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 9.5e-194 682.6 1097 38.1
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.9e-187 660.6 1176 35.7
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 8.1e-185 652.9 1510 30.9
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.6e-154 550.4 989 36.4
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.6e-148 532.3 980 34.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.6e-148 532.3 1036 33.9
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 5.7e-138 497.3 850 37.9
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 4.4e-114 417.9 937 30.6
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 5.2e-107 394.4 499 43.3
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 1.1e-104 386.7 778 32.8
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.2e-97 362.5 393 49.6
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 2.4e-96 359.0 826 31.6
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 2.7e-95 355.5 528 37.9
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.9e-93 349.4 537 36.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.0e-82 312.8 296 53.4
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.0e-74 286.2 260 53.8
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.5e-74 284.3 697 30.6
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.3e-73 283.5 722 30.9
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 8.6e-70 270.8 564 32.6
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 4.4e-66 258.5 527 32.8
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 7.3e-61 241.1 216 56.9
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 3.6e-52 212.2 317 39.4
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.1e-51 210.7 410 33.7
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.5e-50 206.8 497 30.0
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 9.9e-50 204.1 891 22.2
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.3e-49 203.8 470 30.6
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 5.3e-35 155.2 361 31.0
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.2e-28 133.3 309 29.4
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.8e-28 132.1 308 29.2
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-27 130.6 233 35.2
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.2e-25 123.2 165 42.4
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.2e-23 117.5 242 30.2
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.1e-21 110.9 150 42.0
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.2e-16 92.4 93 45.2
SMO144G0155 Selaginella moellendorffii HOM05D004963 ORTHO05D379285 1.5e-13 84.0 218 33.9
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 9.7e-13 81.3 327 24.2
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 9.7e-13 81.3 103 42.7
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.7e-09 70.5 125 31.2
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 2.7e-07 63.2 126 27.8
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.4e-06 60.8 253 25.3
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 2.3e-06 60.1 102 34.3
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 2.3e-06 60.1 89 34.8
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 3.9e-06 59.3 161 31.1
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 8.8e-06 58.2 104 33.7


User provided reference genes

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