Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.2e-157 559.7 269 100.0
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 6.0e-96 354.8 272 64.3
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 7.4e-62 241.5 159 70.4
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 1.1e-60 237.7 167 64.1
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 5.3e-60 235.3 191 61.3
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 6.9e-60 235.0 176 61.4
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 2.6e-59 233.0 185 60.5
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 1.3e-58 230.7 182 61.5
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 2.9e-58 229.6 182 61.0
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 5.0e-58 228.8 158 63.9
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 6.5e-58 228.4 185 59.5
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 1.1e-57 227.6 205 56.6
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 1.4e-57 227.3 160 65.6
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 2.5e-57 226.5 161 67.1
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 2.5e-57 226.5 161 67.1
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 5.5e-57 225.3 159 65.4
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 5.5e-57 225.3 244 50.0
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 5.5e-57 225.3 200 56.0
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 7.2e-57 224.9 224 53.1
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 9.4e-57 224.6 180 61.1
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 9.4e-57 224.6 193 56.5
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 9.4e-57 224.6 201 57.7
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 1.2e-56 224.2 252 50.0
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 1.2e-56 224.2 161 65.2
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 2.1e-56 223.4 227 52.4
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 2.7e-56 223.0 185 57.8
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 2.7e-56 223.0 159 64.8
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 3.6e-56 222.6 187 57.2
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 3.6e-56 222.6 201 54.7
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 3.6e-56 222.6 168 61.9
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 3.6e-56 222.6 166 62.0
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 4.7e-56 222.2 190 56.8
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 4.7e-56 222.2 161 65.2
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 6.1e-56 221.9 190 56.8
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 7.9e-56 221.5 209 55.5
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 7.9e-56 221.5 159 64.2
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 7.9e-56 221.5 161 64.0
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 7.9e-56 221.5 157 64.3
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 1.0e-55 221.1 161 64.0
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 1.0e-55 221.1 178 60.7
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 1.4e-55 220.7 165 60.6
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 1.8e-55 220.3 161 63.4
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 1.8e-55 220.3 165 59.4
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 1.8e-55 220.3 158 63.9
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.8e-55 220.3 158 63.9
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.8e-55 220.3 158 63.9
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.8e-55 220.3 158 63.9
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 1.8e-55 220.3 163 63.8
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 1.8e-55 220.3 159 64.8
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.8e-55 220.3 159 64.8
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 1.8e-55 220.3 183 57.9
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 2.3e-55 219.9 167 62.3
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 2.3e-55 219.9 163 63.2
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 2.3e-55 219.9 163 63.2
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 3.0e-55 219.5 165 60.6
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 3.0e-55 219.5 189 55.6
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 3.0e-55 219.5 189 55.6
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 3.0e-55 219.5 165 60.6
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 3.9e-55 219.2 182 57.7
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 5.2e-55 218.8 165 60.0
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 5.2e-55 218.8 161 64.0
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 6.7e-55 218.4 165 61.2
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 8.8e-55 218.0 161 63.4
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 8.8e-55 218.0 165 59.4
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 8.8e-55 218.0 165 59.4
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 1.1e-54 217.6 167 61.1
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 2.0e-54 216.9 161 63.4
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 2.0e-54 216.9 161 63.4
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 2.6e-54 216.5 167 61.1
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 3.3e-54 216.1 173 60.7
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 4.4e-54 215.7 169 58.0
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 5.7e-54 215.3 165 59.4
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 5.7e-54 215.3 160 61.9
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 7.4e-54 214.9 165 59.4
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 9.7e-54 214.5 161 62.7
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 9.7e-54 214.5 179 58.1
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 9.7e-54 214.5 161 62.1
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 1.3e-53 214.2 188 55.3
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 2.2e-53 213.4 162 63.0
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 3.7e-53 212.6 194 55.7
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 2.0e-51 206.8 180 56.7
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 2.0e-51 206.8 165 57.0
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 7.7e-51 204.9 149 61.7
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 7.7e-51 204.9 187 55.6
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 6.5e-50 201.8 159 60.4
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 8.5e-50 201.4 149 61.7
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 5.5e-49 198.7 217 50.7
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 6.1e-48 195.3 192 50.0
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 8.0e-48 194.9 168 56.0
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 5.2e-47 192.2 180 55.6
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 4.4e-46 189.1 187 51.9
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 1.7e-45 187.2 130 65.4
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 1.7e-42 177.2 246 41.1
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.9e-41 173.7 230 45.2
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 3.6e-40 169.5 122 60.7
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 1.0e-39 167.9 165 52.1
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 2.6e-38 163.3 182 50.0
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 5.7e-38 162.2 160 47.5
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 2.7e-35 153.3 102 68.6
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 9.5e-33 144.8 175 47.4
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 3.6e-32 142.9 92 70.7
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 6.1e-32 142.1 93 66.7
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 5.2e-31 139.0 91 69.2
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 6.8e-31 138.7 91 68.1
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 1.5e-30 137.5 204 41.7
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 9.8e-30 134.8 122 54.1
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 1.2e-27 127.9 82 68.3
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 2.7e-27 126.7 81 67.9
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 4.5e-27 125.9 161 42.2
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 4.4e-22 109.4 87 59.8
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 1.1e-20 104.8 84 58.3
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 3.5e-19 99.8 62 69.4
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 1.7e-18 97.4 80 55.0
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 1.7e-18 97.4 80 55.0
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 8.6e-18 95.1 80 53.8
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 4.3e-17 92.8 64 64.1
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 7.3e-17 92.0 185 34.1
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 5.2e-15 85.9 67 59.7
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.2e-14 84.7 78 51.3
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 3.7e-13 79.7 82 50.0


User provided reference genes

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