Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.0e-219 765.4 373 100.0
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.0e-219 765.4 373 100.0
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.6e-139 500.0 315 73.3
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 6.7e-138 494.6 319 72.1
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.5e-132 476.9 337 65.9
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.9e-132 476.5 323 67.8
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.9e-132 476.5 315 68.6
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.2e-132 475.3 342 64.6
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.2e-132 475.3 342 64.6
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 4.2e-132 475.3 342 65.8
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 7.2e-132 474.6 313 68.7
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 2.1e-131 473.0 311 67.8
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.7e-131 472.6 317 67.2
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 4.7e-131 471.9 313 69.0
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.7e-131 471.9 313 67.7
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 8.0e-131 471.1 322 67.7
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.4e-130 470.3 316 67.4
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 1.8e-130 469.9 315 70.5
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 3.0e-130 469.2 313 67.7
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 4.0e-130 468.8 315 68.9
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 5.2e-130 468.4 308 68.8
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 5.2e-130 468.4 307 69.4
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.8e-130 468.0 342 63.5
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 8.8e-130 467.6 317 68.1
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 1.5e-129 466.8 312 68.3
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 1.5e-129 466.8 308 68.2
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.5e-129 466.8 340 65.6
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 2.6e-129 466.1 317 66.6
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 2.6e-129 466.1 342 63.2
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 3.4e-129 465.7 315 67.3
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.4e-129 465.7 310 68.1
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 3.4e-129 465.7 312 67.6
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 3.4e-129 465.7 309 69.3
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 4.4e-129 465.3 314 66.9
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 4.4e-129 465.3 341 63.9
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 5.7e-129 464.9 308 69.5
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.7e-129 464.9 317 66.6
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 5.7e-129 464.9 342 63.2
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 5.7e-129 464.9 342 63.5
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 5.7e-129 464.9 319 66.5
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 7.5e-129 464.5 317 66.6
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 9.8e-129 464.2 320 66.2
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.3e-128 463.8 338 64.5
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.3e-128 463.8 313 66.1
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.3e-128 463.8 313 66.1
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.3e-128 463.8 315 67.9
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.7e-128 463.4 314 66.6
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 1.7e-128 463.4 308 68.8
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.7e-128 463.4 344 63.4
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.2e-128 463.0 346 62.7
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 2.2e-128 463.0 317 66.6
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 2.2e-128 463.0 310 68.1
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 3.7e-128 462.2 317 64.7
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 3.7e-128 462.2 305 69.8
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 4.8e-128 461.8 308 67.5
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.8e-128 461.8 340 63.2
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 6.3e-128 461.5 310 67.4
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 6.3e-128 461.5 309 67.6
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 6.3e-128 461.5 308 69.2
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.1e-127 460.7 317 66.2
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.4e-127 460.3 308 67.9
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.4e-127 460.3 311 66.2
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.4e-127 460.3 315 66.7
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.8e-127 459.9 312 66.7
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.8e-127 459.9 317 67.8
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 2.4e-127 459.5 307 68.1
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 4.1e-127 458.8 309 68.3
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 4.1e-127 458.8 342 62.6
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 4.1e-127 458.8 342 62.6
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 5.4e-127 458.4 307 67.8
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 5.4e-127 458.4 337 64.1
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 5.4e-127 458.4 337 64.1
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 7.0e-127 458.0 311 67.8
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 7.0e-127 458.0 312 66.0
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 7.0e-127 458.0 337 65.0
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 9.1e-127 457.6 307 67.8
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 9.1e-127 457.6 337 62.9
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.2e-126 457.2 308 67.2
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.6e-126 456.8 309 68.0
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 2.0e-126 456.4 346 61.0
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 2.0e-126 456.4 346 61.0
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 3.5e-126 455.7 317 65.3
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 5.9e-126 454.9 308 67.2
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 7.7e-126 454.5 308 67.9
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 7.7e-126 454.5 317 65.3
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.0e-125 454.1 313 66.1
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 1.0e-125 454.1 323 64.7
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 1.3e-125 453.8 346 60.7
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.3e-125 453.8 313 66.1
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.7e-125 453.4 337 62.9
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 2.9e-125 452.6 302 68.9
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.9e-125 452.6 308 66.6
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.9e-125 452.6 313 66.1
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 6.5e-125 451.4 311 66.2
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 6.5e-125 451.4 308 65.9
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 8.6e-125 451.1 337 62.6
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 1.1e-124 450.7 342 62.3
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.5e-124 450.3 309 67.6
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 3.2e-124 449.1 342 62.0
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 4.2e-124 448.7 346 59.8
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 4.2e-124 448.7 346 59.8
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 5.5e-124 448.4 313 63.3
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.2e-124 448.0 309 66.7
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 9.5e-124 447.6 305 67.2
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.6e-123 446.8 309 66.3
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 2.1e-123 446.4 309 67.6
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.8e-123 446.0 312 65.7
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 8.0e-123 444.5 308 63.3
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 8.0e-123 444.5 317 64.7
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 2.6e-121 439.5 368 57.3
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 4.4e-121 438.7 319 63.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.3e-120 437.2 304 65.5
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.0e-117 425.2 306 65.0
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.1e-116 424.1 360 58.6
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 3.0e-114 416.0 275 68.7
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 6.8e-114 414.8 294 63.6
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 6.8e-114 414.8 315 62.2
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 5.4e-111 405.2 272 66.9
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 7.0e-111 404.8 276 66.7
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 6.4e-104 381.7 313 58.1
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 3.5e-102 375.9 250 66.8
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 9.2e-95 351.3 342 52.3
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 8.4e-88 328.2 320 50.3
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 5.4e-87 325.5 222 68.9
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.6e-78 297.4 242 57.9
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 3.5e-78 296.2 214 62.6
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.0e-74 282.7 347 42.9
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 2.3e-69 266.9 360 38.3
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 5.1e-45 186.0 123 69.1
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 2.5e-23 114.0 89 60.7
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 9.7e-20 102.1 82 56.1
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.4e-18 98.2 80 65.0
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 3.6e-14 83.6 66 60.6
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 5.9e-09 66.2 76 42.1
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.7e-08 64.7 42 59.5
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 2.1e-06 57.8 52 48.1
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 4.7e-06 56.6 39 61.5


User provided reference genes

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