Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 4.9e-34 147.1 69 100.0
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 3.8e-26 120.9 61 90.2
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 4.9e-18 94.0 61 67.2
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 6.4e-18 93.6 61 67.2
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 4.2e-17 90.9 61 65.6
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 9.3e-17 89.7 61 65.6
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 9.3e-17 89.7 61 63.9
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 9.3e-17 89.7 61 63.9
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.2e-16 89.4 61 63.9
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 1.2e-16 89.4 61 62.3
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 1.6e-16 89.0 61 63.9
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 2.1e-16 88.6 61 62.3
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 2.7e-16 88.2 61 62.3
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 2.7e-16 88.2 61 63.9
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 2.7e-16 88.2 61 63.9
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 2.7e-16 88.2 61 63.9
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 2.7e-16 88.2 61 63.9
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 2.7e-16 88.2 61 65.6
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 3.5e-16 87.8 61 65.6
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 3.5e-16 87.8 61 59.0
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 3.5e-16 87.8 62 62.9
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 6.0e-16 87.0 61 62.3
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 6.0e-16 87.0 61 60.7
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 6.0e-16 87.0 61 60.7
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 6.0e-16 87.0 61 60.7
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 7.8e-16 86.7 61 62.3
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 7.8e-16 86.7 61 60.7
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 7.8e-16 86.7 61 60.7
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 7.8e-16 86.7 61 63.9
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 1.0e-15 86.3 61 60.7
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 1.0e-15 86.3 61 63.9
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 59.0
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 59.0
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 59.0
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 59.0
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 62.3
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 62.3
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 60.7
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 1.7e-15 85.5 61 62.3
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 2.3e-15 85.1 61 59.0
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 2.3e-15 85.1 61 60.7
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 2.3e-15 85.1 61 62.3
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 2.3e-15 85.1 61 57.4
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 3.0e-15 84.7 61 59.0
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 3.0e-15 84.7 61 59.0
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 3.0e-15 84.7 61 59.0
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 3.0e-15 84.7 62 59.7
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 3.0e-15 84.7 61 59.0
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 59.0
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 57.4
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 57.4
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 57.4
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 59.0
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 59.0
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 60.7
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 3.9e-15 84.3 61 55.7
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 5.1e-15 84.0 61 59.0
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 5.1e-15 84.0 61 57.4
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 5.1e-15 84.0 61 57.4
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 5.1e-15 84.0 61 60.7
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 6.6e-15 83.6 61 57.4
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 6.6e-15 83.6 61 59.0
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 6.6e-15 83.6 61 59.0
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 6.6e-15 83.6 61 59.0
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 8.7e-15 83.2 61 59.0
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 8.7e-15 83.2 61 59.0
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 8.7e-15 83.2 62 56.5
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 8.7e-15 83.2 61 57.4
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 55.7
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 57.4
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 59.0
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.1e-14 82.8 61 59.0
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 59.0
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 59.0
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 57.4
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 57.4
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 1.1e-14 82.8 61 59.0
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 1.5e-14 82.4 61 59.0
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 1.5e-14 82.4 61 54.1
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 59.0
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.9e-14 82.0 61 59.0
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 57.4
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 59.0
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 1.9e-14 82.0 61 54.1
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 2.5e-14 81.6 61 57.4
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 2.5e-14 81.6 61 55.7
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 2.5e-14 81.6 61 57.4
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 3.3e-14 81.3 61 57.4
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 3.3e-14 81.3 61 55.7
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 3.3e-14 81.3 61 54.1
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 4.3e-14 80.9 61 57.4
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 4.3e-14 80.9 61 55.7
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.6e-14 80.5 61 57.4
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 5.6e-14 80.5 61 55.7
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 5.6e-14 80.5 61 55.7
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 5.6e-14 80.5 61 55.7
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 5.6e-14 80.5 61 57.4
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 7.3e-14 80.1 61 57.4
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 7.3e-14 80.1 61 57.4
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 7.3e-14 80.1 61 59.0
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 9.6e-14 79.7 61 52.5
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 9.6e-14 79.7 62 53.2
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 9.6e-14 79.7 61 55.7
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 1.3e-13 79.3 61 57.4
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.3e-13 79.3 61 55.7
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 1.3e-13 79.3 61 54.1
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 2.1e-13 78.6 61 55.7
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 2.8e-13 78.2 61 54.1
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 3.6e-13 77.8 61 54.1
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 4.8e-13 77.4 61 55.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.4e-12 75.9 57 57.9
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.4e-12 75.9 75 49.3
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.8e-12 75.5 61 55.7
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 3.1e-12 74.7 60 55.0
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.0e-12 74.3 61 52.5
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 9.0e-12 73.2 61 54.1
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 1.2e-11 72.8 61 55.7
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.2e-11 72.8 61 54.1
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 1.5e-11 72.4 61 54.1
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 2.6e-11 71.6 50 60.0
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 7.6e-11 70.1 61 50.8
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 7.6e-11 70.1 61 52.5
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 7.6e-11 70.1 61 52.5
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 7.6e-11 70.1 61 52.5
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 9.9e-11 69.7 43 67.4
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 9.9e-11 69.7 61 50.8
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 1.7e-10 68.9 60 55.0
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.7e-10 68.9 61 50.8
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.9e-10 68.2 61 50.8
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 3.8e-10 67.8 61 47.5
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 1.1e-09 66.2 97 37.1
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 3.0e-07 58.2 33 72.7
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 5.1e-07 57.4 59 45.8
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 4.3e-06 54.3 33 63.6


User provided reference genes

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