Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_2080 Physcomitrium patens HOM05D007841 ORTHO05D009919 2.9e-45 184.9 95 100.0
Mapoly0181s0011 Marchantia polymorpha HOM05D007841 ORTHO05D009919 7.2e-20 100.5 77 64.9
Cc02_g25410 Coffea canephora HOM05D007841 ORTHO05D009919 4.8e-16 87.8 68 64.7
COL.COLO4_12370 Corchorus olitorius HOM05D007841 ORTHO05D009919 1.8e-15 85.9 64 65.6
Sed0011386 Sechium edule HOM05D007841 ORTHO05D009919 2.4e-15 85.5 71 60.6
Hma1.2p1_2138F.1_g314930 Hydrangea macrophylla HOM05D007841 ORTHO05D009919 3.1e-15 85.1 70 58.6
Psat3g152880 Pisum sativum HOM05D007841 ORTHO05D009919 4.1e-15 84.7 64 65.6
Phvul.008G138900 Phaseolus vulgaris HOM05D007841 ORTHO05D009919 5.4e-15 84.3 86 54.7
THA.LOC104814059 Tarenaya hassleriana HOM05D007841 ORTHO05D009919 5.4e-15 84.3 57 70.2
Medtr7g050540 Medicago truncatula HOM05D007841 ORTHO05D009919 9.1e-15 83.6 64 64.1
Atru.chr5.91 Acer truncatum HOM05D007841 ORTHO05D009919 1.2e-14 83.2 67 62.7
ClCG05G003010 Citrullus lanatus HOM05D007841 ORTHO05D009919 1.2e-14 83.2 65 63.1
HanXRQChr01g0019691 Helianthus annuus HOM05D007841 ORTHO05D009919 1.2e-14 83.2 72 61.1
Prupe.2G120100 Prunus persica HOM05D007841 ORTHO05D009919 1.2e-14 83.2 68 60.3
EL10Ac1g00736 Beta vulgaris HOM05D007841 ORTHO05D009919 1.6e-14 82.8 67 58.2
arahy.Tifrunner.gnm1.ann1.K94MSK Arachis hypogaea HOM05D007841 ORTHO05D009919 2.7e-14 82.0 74 58.1
CAN.G756.38 Capsicum annuum HOM05D007841 ORTHO05D009919 2.7e-14 82.0 57 68.4
Lj1g0014858 Lotus japonicus HOM05D007841 ORTHO05D009919 2.7e-14 82.0 57 68.4
Potri.014G051850 Populus trichocarpa HOM05D007841 ORTHO05D009919 2.7e-14 82.0 65 63.1
Solyc01g088770.3 Solanum lycopersicum HOM05D007841 ORTHO05D009919 2.7e-14 82.0 71 59.2
Sopen01g035610 Solanum pennellii HOM05D007841 ORTHO05D009919 2.7e-14 82.0 71 59.2
PGSC0003DMG400001726 Solanum tuberosum HOM05D007841 ORTHO05D009919 2.7e-14 82.0 71 59.2
CANSAT25G3347 Cannabis sativa HOM05D007841 ORTHO05D009919 3.5e-14 81.6 64 62.5
CANSAT25G3825 Cannabis sativa HOM05D007841 ORTHO05D009919 3.5e-14 81.6 64 62.5
MD02G1221100 Malus domestica HOM05D007841 ORTHO05D009919 3.5e-14 81.6 64 65.6
PGR004G1954 Punica granatum HOM05D007841 ORTHO05D009919 3.5e-14 81.6 71 57.7
Glyma.08G340600 Glycine max HOM05D007841 ORTHO05D009919 4.5e-14 81.3 57 68.4
Oeu034848.1 Olea europaea HOM05D007841 ORTHO05D009919 5.9e-14 80.9 68 58.8
PSO675G0834 Papaver somniferum HOM05D007841 ORTHO05D009919 5.9e-14 80.9 68 58.8
C05p00040 Brassica napus HOM05D007841 ORTHO05D009919 1.0e-13 80.1 65 63.1
BolC5t28791H Brassica oleracea HOM05D007841 ORTHO05D009919 1.0e-13 80.1 65 63.1
CARHR000160 Cardamine hirsuta HOM05D007841 ORTHO05D009919 1.0e-13 80.1 69 60.9
Eucgr.D01199 Eucalyptus grandis HOM05D007841 ORTHO05D009919 1.0e-13 80.1 64 62.5
Lsat_1_v5_gn_1_83981 Lactuca sativa HOM05D007841 ORTHO05D009919 1.0e-13 80.1 64 62.5
Aqoxy7G00835 Aquilegia oxysepala HOM05D007841 ORTHO05D009919 1.3e-13 79.7 63 61.9
AL1G10060 Arabidopsis lyrata HOM05D007841 ORTHO05D009919 1.3e-13 79.7 66 62.1
ECA248G0141 Erigeron canadensis HOM05D007841 ORTHO05D009919 1.3e-13 79.7 64 62.5
Thhalv10009237m.g Eutrema salsugineum HOM05D007841 ORTHO05D009919 1.3e-13 79.7 67 62.7
BcaB03g13636 Brassica carinata HOM05D000300 ORTHO05D000383 1.7e-13 79.3 65 63.1
Duzib138G1421 Durio zibethinus HOM05D007841 ORTHO05D009919 1.7e-13 79.3 64 60.9
Gohir.D12G101400 Gossypium hirsutum HOM05D007841 ORTHO05D009919 1.7e-13 79.3 64 60.9
Gorai.008G110500 Gossypium raimondii HOM05D007841 ORTHO05D009919 1.7e-13 79.3 64 60.9
PSO732G0215 Papaver somniferum HOM05D007841 ORTHO05D009919 1.7e-13 79.3 57 66.7
Thecc.01G400700 Theobroma cacao HOM05D007841 ORTHO05D009919 1.7e-13 79.3 65 63.1
Actinidia30942 Actinidia chinensis HOM05D007841 ORTHO05D009919 2.3e-13 79.0 70 55.7
AT1G02160 Arabidopsis thaliana HOM05D007841 ORTHO05D009919 2.3e-13 79.0 65 63.1
Carub.0001s0004 Capsella rubella HOM05D007841 ORTHO05D009919 2.3e-13 79.0 65 63.1
Lalb_Chr03g0040951 Lupinus albus HOM05D007841 ORTHO05D009919 2.3e-13 79.0 64 62.5
RcHm_v2.0_Chr1g0345181 Rosa chinensis HOM05D007841 ORTHO05D009919 2.9e-13 78.6 71 56.3
Gohir.A12G098200 Gossypium hirsutum HOM05D007841 ORTHO05D009919 3.8e-13 78.2 57 64.9
Manes.05G057100 Manihot esculenta HOM05D007841 ORTHO05D009919 3.8e-13 78.2 82 51.2
MD07G1096500 Malus domestica HOM05D007841 ORTHO05D009919 5.0e-13 77.8 64 60.9
CsaV3_3G010620 Cucumis sativus L. HOM05D007841 ORTHO05D009919 1.1e-12 76.6 89 49.4
CiPaw.14G018000 Carya illinoinensis HOM05D007841 ORTHO05D009919 1.9e-12 75.9 85 49.4
Migut.N01723 Erythranthe guttata HOM05D007841 ORTHO05D009919 1.9e-12 75.9 57 66.7
FvH4_7g09140 Fragaria vesca HOM05D007841 ORTHO05D009919 1.9e-12 75.9 75 53.3
Os04g0665000 Oryza sativa ssp. japonica HOM05D007841 ORTHO05D009919 4.2e-12 74.7 81 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3132 Anthoceros agrestis HOM05D007841 ORTHO05D009919 1.2e-11 73.2 54 68.5
Ciclev10023064m.g Citrus clementina HOM05D007841 ORTHO05D009919 1.2e-11 73.2 52 63.5
GSVIVG01018320001 Vitis vinifera HOM05D007841 ORTHO05D009919 1.2e-11 73.2 63 60.3
unitig_22.g6702 Utricularia gibba HOM05D007841 ORTHO05D009919 2.1e-11 72.4 85 51.8
FAN06G3108 Fragaria x ananassa HOM05D007841 ORTHO05D009919 2.8e-11 72.0 65 53.8
Zm00001eb067220 Zea mays HOM05D007841 ORTHO05D009919 2.8e-11 72.0 81 53.1
Nitab4.5_0004425g0050 Nicotiana tabacum HOM05D007841 ORTHO05D009919 4.7e-11 71.2 56 58.9
CSS0006405 Camellia sinensis var. sinensis HOM05D007841 ORTHO05D009919 1.0e-10 70.1 56 57.1
Haze_02887 Corylus avellana HOM05D000061 ORTHO05D000915 1.0e-10 70.1 74 50.0
PSO732G0130 Papaver somniferum HOM05D007841 ORTHO05D009919 2.3e-10 68.9 42 71.4
Peaxi162Scf00793g00363 Petunia axillaris HOM05D007841 ORTHO05D009919 3.0e-10 68.6 56 58.9
Hund17114 Selenicereus undatus HOM05D007841 ORTHO05D009919 4.0e-10 68.2 74 48.6
arahy.Tifrunner.gnm1.ann1.X5EUJ4 Arachis hypogaea HOM05D007841 ORTHO05D009919 6.8e-10 67.4 64 51.6
Sc02g0003210 Simmondsia chinensis HOM05D007841 ORTHO05D009919 8.8e-10 67.0 50 58.0
BraA10t42285Z Brassica rapa HOM05D007841 ORTHO05D009919 1.2e-09 66.6 54 61.1
Sp1g00090 Schrenkiella parvula HOM05D007841 ORTHO05D009919 1.5e-09 66.2 50 64.0
AUR62023385 Chenopodium quinoa HOM05D007841 ORTHO05D009919 2.0e-09 65.9 53 56.6
SalBow4G0679 Salvia bowleyana HOM05D007841 ORTHO05D009919 4.4e-09 64.7 53 54.7
AUR62013771 Chenopodium quinoa HOM05D007841 ORTHO05D009919 7.5e-09 63.9 71 49.3
FAN01G1055 Fragaria x ananassa HOM05D007841 ORTHO05D009919 7.5e-09 63.9 75 45.3
FAN03G2201 Fragaria x ananassa HOM05D007841 ORTHO05D009919 7.5e-09 63.9 75 45.3
Nn6g33742 Nelumbo nucifera HOM05D007841 ORTHO05D009919 7.5e-09 63.9 84 45.2
Aa31LG1G11570 Aethionema arabicum HOM05D007841 ORTHO05D009919 5.4e-07 57.8 47 61.7
Sabra14G0036700 Salix brachista HOM05D007841 ORTHO05D009919 1.2e-06 56.6 40 70.0
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.6e-06 56.2 44 61.4
Actinidia05779 Actinidia chinensis HOM05D007841 ORTHO05D009919 3.5e-06 55.1 33 72.7


User provided reference genes

Program Settings