Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.0e-309 1065.8 526 100.0
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 2.2e-134 483.4 529 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 2.3e-131 473.4 537 45.8
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 4.7e-129 465.7 531 44.8
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.8e-128 463.8 534 46.1
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 2.3e-128 463.4 531 44.8
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 4.0e-128 462.6 531 45.2
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 4.4e-127 459.1 535 47.7
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 7.6e-127 458.4 532 44.4
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.2e-124 451.1 531 44.4
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 1.3e-123 447.6 534 45.7
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.7e-123 447.2 536 44.0
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 3.0e-123 446.4 536 44.8
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 3.0e-123 446.4 532 46.2
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 5.1e-123 445.7 550 44.5
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.9e-122 443.7 544 44.9
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 5.6e-122 442.2 533 46.0
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 7.3e-122 441.8 551 44.8
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 2.8e-121 439.9 537 44.9
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 4.7e-121 439.1 548 44.3
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 4.7e-121 439.1 539 44.2
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 8.1e-121 438.3 534 44.4
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 1.1e-120 438.0 524 45.0
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.4e-120 437.6 544 44.1
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 1.8e-120 437.2 517 43.9
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.8e-120 437.2 434 48.6
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 2.4e-120 436.8 518 44.4
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 3.1e-120 436.4 536 45.0
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 4.0e-120 436.0 519 43.4
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 1.2e-119 434.5 522 43.1
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.5e-119 434.1 543 43.6
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 2.0e-119 433.7 524 43.7
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 2.0e-119 433.7 538 45.0
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 2.0e-119 433.7 537 44.7
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 3.4e-119 433.0 531 43.5
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 3.4e-119 433.0 536 43.3
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 4.4e-119 432.6 518 43.8
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 4.4e-119 432.6 518 43.8
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 7.6e-119 431.8 550 43.1
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 9.9e-119 431.4 518 43.6
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.7e-118 430.6 545 44.8
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.7e-118 430.6 535 41.9
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 2.9e-118 429.9 541 44.9
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 6.4e-118 428.7 524 43.3
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 1.1e-117 427.9 521 44.3
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.4e-117 427.6 544 43.4
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 2.4e-117 426.8 532 43.4
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 4.2e-117 426.0 517 44.1
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 5.4e-117 425.6 523 44.9
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 5.4e-117 425.6 521 42.6
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 5.4e-117 425.6 528 43.2
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.6e-116 424.1 548 42.9
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.7e-116 423.3 537 43.6
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 2.7e-116 423.3 541 43.4
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 4.6e-116 422.5 533 44.7
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 4.6e-116 422.5 525 43.6
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 7.8e-116 421.8 537 43.6
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.0e-115 421.4 548 43.4
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 1.3e-115 421.0 531 43.5
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 3.0e-115 419.9 546 42.3
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 3.0e-115 419.9 541 43.8
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 5.1e-115 419.1 528 43.2
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 1.5e-114 417.5 532 41.2
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 2.5e-114 416.8 542 42.4
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 5.6e-114 415.6 511 42.9
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 7.3e-114 415.2 518 43.4
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 1.3e-113 414.5 518 43.6
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 6.2e-113 412.1 546 42.5
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 6.2e-113 412.1 546 42.1
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 8.1e-113 411.8 530 41.9
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.4e-112 410.2 561 40.1
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 1.2e-111 407.9 539 43.6
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 1.5e-111 407.5 521 42.8
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 7.6e-111 405.2 492 43.3
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 3.2e-109 399.8 483 45.8
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 1.7e-107 394.0 498 44.4
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 3.0e-107 393.3 468 45.1
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.9e-107 392.9 522 42.7
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 1.1e-106 391.3 535 42.6
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 3.3e-106 389.8 521 44.0
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 3.3e-106 389.8 538 42.0
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.3e-105 387.9 471 44.6
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 3.6e-105 386.3 580 39.0
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.7e-102 377.5 527 41.0
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 7.1e-101 372.1 372 49.5
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.3e-99 367.9 521 40.3
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 4.3e-98 362.8 642 36.6
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 5.6e-98 362.5 759 33.1
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 3.1e-96 356.7 442 44.1
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 1.2e-95 354.8 530 38.9
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.3e-91 341.3 531 38.0
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.3e-86 324.7 528 37.5
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 7.4e-74 282.3 360 43.9
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 1.1e-72 278.5 532 34.2
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 2.2e-70 270.8 305 46.6
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 7.9e-68 262.3 263 49.0
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 9.7e-66 255.4 467 34.3
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 3.5e-63 246.9 266 47.7
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 2.7e-52 210.7 427 34.0
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 6.8e-51 206.1 262 45.0
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 6.3e-49 199.5 255 43.1
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 8.3e-49 199.1 312 38.8
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.8e-48 198.0 266 43.2
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 3.1e-48 197.2 494 30.2
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 4.1e-48 196.8 206 47.6
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 6.1e-44 183.0 280 40.0
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 7.5e-42 176.0 184 46.2
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 1.3e-41 175.3 264 42.4
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.5e-37 161.0 254 38.2
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 1.1e-32 145.6 443 29.6
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 3.1e-27 127.5 482 26.3
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 8.9e-27 125.9 127 51.2
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.4e-26 123.6 178 44.9
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.6e-23 115.2 286 30.4
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.6e-20 105.1 122 43.4
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 8.6e-14 82.8 329 24.0
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 9.5e-13 79.3 71 57.7
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 4.9e-09 67.0 76 50.0
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 4.9e-09 67.0 76 50.0
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.1e-08 65.9 112 39.3
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 4.6e-07 60.5 82 42.7
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 1.0e-06 59.3 82 42.7


User provided reference genes

Program Settings