Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.7e-146 522.7 280 100.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.2e-91 340.5 288 69.1
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.4e-90 337.0 280 66.8
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 2.0e-89 333.2 226 77.4
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.3e-89 332.0 224 76.8
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.3e-88 330.5 226 76.5
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.3e-88 330.5 226 76.5
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.3e-88 330.5 226 76.5
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.3e-88 330.5 251 70.1
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 3.7e-88 328.9 223 75.3
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 6.3e-88 328.2 228 73.7
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 8.2e-88 327.8 264 68.6
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 8.2e-88 327.8 264 68.6
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.8e-87 326.6 222 77.0
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 2.4e-87 326.2 217 75.1
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 4.1e-87 325.5 216 76.9
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.1e-87 325.5 222 77.0
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.1e-87 325.5 218 76.6
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 5.3e-87 325.1 230 72.6
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.3e-87 325.1 229 73.8
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.3e-87 325.1 259 68.0
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 9.1e-87 324.3 247 69.2
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.2e-86 323.9 222 76.1
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.5e-86 323.6 278 65.8
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.5e-86 323.6 252 67.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.5e-86 323.6 220 76.8
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 2.0e-86 323.2 221 74.2
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.6e-86 322.8 229 72.9
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 2.6e-86 322.8 227 74.9
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 4.5e-86 322.0 217 76.0
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 5.9e-86 321.6 230 74.3
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 7.7e-86 321.2 221 74.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 7.7e-86 321.2 224 74.6
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 7.7e-86 321.2 262 67.6
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.0e-85 320.9 284 64.8
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.0e-85 320.9 221 74.7
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.3e-85 320.5 225 72.9
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.3e-85 320.5 263 67.7
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.2e-85 319.7 225 75.1
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.2e-85 319.7 262 67.9
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 2.2e-85 319.7 199 80.4
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.9e-85 319.3 270 65.6
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.9e-85 319.3 270 65.6
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 2.9e-85 319.3 278 64.0
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.9e-85 319.3 278 63.7
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 3.8e-85 318.9 222 75.2
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 3.8e-85 318.9 228 74.6
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 3.8e-85 318.9 282 64.2
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 3.8e-85 318.9 221 75.1
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 3.8e-85 318.9 278 64.0
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 6.5e-85 318.2 281 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 8.5e-85 317.8 261 67.4
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 8.5e-85 317.8 218 74.3
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.1e-84 317.4 213 75.1
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.1e-84 317.4 251 68.5
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.4e-84 317.0 252 69.4
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.4e-84 317.0 229 71.6
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.9e-84 316.6 217 75.1
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.9e-84 316.6 225 72.0
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.5e-84 316.2 256 66.4
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 2.5e-84 316.2 249 68.7
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.5e-84 316.2 222 73.4
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 3.2e-84 315.8 217 75.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 3.2e-84 315.8 233 71.7
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.2e-84 315.5 207 77.8
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 4.2e-84 315.5 211 74.4
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 7.2e-84 314.7 222 73.4
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 7.2e-84 314.7 213 76.5
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 7.2e-84 314.7 213 76.5
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-84 314.7 213 76.5
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-84 314.7 213 76.5
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 7.2e-84 314.7 213 76.5
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 7.2e-84 314.7 211 76.8
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 9.4e-84 314.3 221 73.8
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.2e-83 313.9 238 70.6
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.2e-83 313.9 252 67.9
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.2e-83 313.9 225 73.3
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.6e-83 313.5 211 76.8
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.6e-83 313.5 223 73.1
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.6e-83 313.5 232 72.0
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.1e-83 313.2 223 73.1
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.1e-83 313.2 227 70.5
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.7e-83 312.8 213 75.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 2.7e-83 312.8 223 73.1
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.7e-83 312.8 223 72.6
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.6e-83 312.4 223 73.1
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 3.6e-83 312.4 231 71.0
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 3.6e-83 312.4 211 75.8
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 4.7e-83 312.0 281 64.1
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 4.7e-83 312.0 220 73.2
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.7e-83 312.0 205 77.6
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 4.7e-83 312.0 209 76.1
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 6.1e-83 311.6 223 73.1
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 6.1e-83 311.6 213 76.1
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 6.1e-83 311.6 213 76.1
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 6.1e-83 311.6 213 76.1
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 6.1e-83 311.6 213 76.1
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 6.1e-83 311.6 213 76.1
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 6.1e-83 311.6 281 63.3
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 6.1e-83 311.6 220 73.2
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 7.9e-83 311.2 215 74.4
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.0e-82 310.8 284 62.7
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.0e-82 310.8 209 76.1
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 1.0e-82 310.8 194 79.4
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.4e-82 310.5 278 63.3
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.4e-82 310.5 197 77.7
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 3.0e-82 309.3 281 63.0
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 3.9e-82 308.9 209 75.1
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 6.7e-82 308.1 281 63.3
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.1e-81 307.4 276 61.6
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.5e-81 307.0 265 63.8
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 2.0e-81 306.6 194 77.8
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 7.4e-81 304.7 223 72.2
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.3e-80 303.9 236 70.3
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.2e-80 303.1 220 73.6
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 2.8e-80 302.8 257 66.1
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.1e-79 300.8 253 67.2
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.8e-79 300.1 224 68.8
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 5.9e-78 295.0 222 70.7
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.6e-75 287.0 273 61.2
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 3.0e-74 282.7 253 64.4
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.8e-64 248.8 168 72.6
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.4e-63 246.5 183 71.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 5.7e-57 225.3 161 68.3
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 1.2e-54 217.6 161 69.6
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 2.0e-54 216.9 166 65.1
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 5.0e-53 212.2 135 78.5
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.8e-46 188.3 141 73.0
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.9e-45 186.4 157 66.2
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 5.6e-44 182.2 147 67.3
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 7.0e-39 165.2 161 55.9
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.3e-36 156.4 265 40.0
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.3e-36 156.0 265 40.0
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.3e-32 144.4 122 62.3
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.9e-32 143.3 97 72.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 8.6e-29 131.7 106 67.0
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 4.3e-28 129.4 163 51.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.4e-15 87.0 81 60.5
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 9.6e-12 75.1 63 69.8
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.8e-09 65.9 146 35.6
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 5.8e-09 65.9 176 29.5
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.2e-06 58.2 36 77.8
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 6.0e-06 55.8 36 77.8


User provided reference genes

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