Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 0.0e+00 1436.4 719 100.0
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 7.4e-311 1070.1 676 80.2
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 3.8e-153 546.2 660 46.8
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 8.7e-150 535.0 583 49.6
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.9e-141 507.3 429 56.2
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 8.5e-121 438.7 554 44.8
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 3.3e-109 400.2 591 40.8
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 7.2e-104 382.5 657 37.3
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.6e-103 381.3 542 41.9
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.6e-103 381.3 543 42.2
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.6e-103 381.3 441 44.7
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 2.1e-103 380.9 541 40.1
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 2.3e-102 377.5 546 40.3
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 3.0e-102 377.1 619 38.3
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 4.0e-102 376.7 527 40.0
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 8.8e-102 375.6 597 38.7
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 2.6e-101 374.0 542 39.3
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 4.4e-101 373.2 528 39.0
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 4.4e-101 373.2 563 39.1
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 7.5e-101 372.5 567 38.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 3.7e-100 370.2 515 40.0
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 4.8e-100 369.8 528 40.3
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 6.3e-100 369.4 527 39.7
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.1e-99 368.6 563 38.4
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 3.1e-99 367.1 533 39.8
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 3.5e-98 363.6 562 38.4
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 3.5e-98 363.6 595 37.3
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 3.5e-98 363.6 533 40.9
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 1.0e-97 362.1 643 37.0
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 2.2e-97 360.9 489 41.7
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 3.8e-97 360.1 553 38.3
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.1e-96 358.6 635 35.9
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.1e-96 358.6 476 41.4
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.9e-96 357.8 535 39.4
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.5e-96 357.5 489 41.3
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 4.2e-96 356.7 549 39.5
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 4.2e-96 356.7 536 39.6
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.2e-96 356.7 527 39.7
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 5.5e-96 356.3 549 39.0
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 5.5e-96 356.3 642 36.3
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 5.5e-96 356.3 579 37.3
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 7.2e-96 355.9 583 37.7
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 9.4e-96 355.5 525 39.8
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.2e-95 355.1 567 38.4
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.2e-95 355.1 525 41.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.6e-95 354.8 535 38.3
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 2.1e-95 354.4 535 39.1
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 3.6e-95 353.6 533 39.2
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.7e-95 353.2 538 39.0
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 4.7e-95 353.2 564 38.5
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.8e-94 351.3 569 38.5
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.3e-94 350.9 535 38.5
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.3e-94 350.9 538 39.0
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 2.3e-94 350.9 512 39.5
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 3.0e-94 350.5 668 34.7
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 5.2e-94 349.7 647 35.5
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 6.8e-94 349.4 623 36.4
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 8.8e-94 349.0 562 38.1
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 8.8e-94 349.0 633 35.5
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 8.8e-94 349.0 658 37.4
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 8.8e-94 349.0 538 39.4
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 8.8e-94 349.0 538 38.8
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.2e-93 348.6 605 36.7
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.2e-93 348.6 605 36.7
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 2.0e-93 347.8 585 37.1
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 3.4e-93 347.1 599 37.1
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.4e-93 347.1 636 35.5
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 4.4e-93 346.7 562 37.9
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 4.4e-93 346.7 527 39.8
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 5.7e-93 346.3 559 37.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 9.8e-93 345.5 611 36.0
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 9.8e-93 345.5 570 36.8
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 9.8e-93 345.5 611 36.7
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 2.8e-92 344.0 653 36.1
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 2.8e-92 344.0 545 37.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.8e-92 344.0 435 41.8
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 3.7e-92 343.6 594 36.7
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 4.8e-92 343.2 629 36.6
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 8.3e-92 342.4 549 38.1
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 1.1e-91 342.0 602 37.0
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.1e-91 342.0 562 37.9
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.4e-91 341.7 440 41.1
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.4e-91 340.9 562 37.7
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.0e-91 339.3 544 37.9
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 9.1e-91 339.0 554 37.2
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 9.1e-91 339.0 616 36.4
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.2e-90 338.6 532 38.3
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 4.5e-90 336.7 548 38.0
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 5.9e-90 336.3 562 37.4
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 7.7e-90 335.9 574 35.7
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 7.7e-90 335.9 548 38.0
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 7.7e-90 335.9 588 36.1
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.0e-89 335.5 547 37.3
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 1.3e-89 335.1 560 37.3
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 1.3e-89 335.1 541 37.9
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 3.8e-89 333.6 585 35.0
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 5.0e-89 333.2 437 41.0
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 1.5e-88 331.6 532 37.0
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.9e-88 331.3 531 38.2
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.5e-88 330.9 505 37.2
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.5e-88 330.9 437 40.5
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 2.5e-88 330.9 553 37.6
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 2.5e-88 330.9 563 37.1
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 4.2e-88 330.1 471 39.1
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 5.5e-88 329.7 557 34.8
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 7.2e-88 329.3 500 37.6
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 9.4e-88 328.9 538 35.9
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.2e-87 328.6 518 38.8
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 3.6e-87 327.0 582 35.7
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 4.7e-87 326.6 551 38.7
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 1.8e-86 324.7 643 34.1
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 3.0e-86 323.9 537 36.9
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 5.2e-86 323.2 553 37.8
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 6.8e-86 322.8 541 36.2
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.4e-85 320.1 500 38.6
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 4.9e-84 316.6 582 34.0
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 2.4e-83 314.3 460 38.9
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.6e-82 311.6 505 38.6
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 7.7e-82 309.3 539 35.6
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.5e-80 305.1 562 35.4
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 2.3e-78 297.7 479 36.7
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 8.9e-78 295.8 477 35.2
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.5e-77 295.0 445 37.5
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 2.0e-77 294.7 571 34.0
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.2e-76 291.2 604 32.6
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 4.1e-75 287.0 449 39.2
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 1.9e-56 224.9 303 40.6
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.9e-51 208.4 248 44.0
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 5.6e-48 196.8 251 42.6
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 1.6e-47 195.3 649 27.9
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 8.9e-46 189.5 285 37.5
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.3e-39 169.1 528 26.7
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 3.1e-38 164.5 301 35.9
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 8.1e-31 139.8 133 49.6
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 4.6e-18 97.4 803 20.9
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 2.1e-15 88.6 131 35.9


User provided reference genes

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