Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_38360 Physcomitrium patens HOM05D000104 ORTHO05D030898 2.7e-98 362.1 195 100.0
Pp3c15_23590 Physcomitrium patens HOM05D000104 ORTHO05D008568 1.0e-52 210.7 155 80.0
Mapoly0036s0084 Marchantia polymorpha HOM05D000104 ORTHO05D008568 2.4e-17 93.2 140 46.4
CBR_g39569 Chara braunii HOM05D000104 ORTHO05D008568 3.1e-17 92.8 145 42.8
CiPaw.03G266400 Carya illinoinensis HOM05D000104 ORTHO05D008568 4.0e-17 92.4 151 41.7
Manes.13G035800 Manihot esculenta HOM05D000104 ORTHO05D008568 1.2e-16 90.9 130 43.8
Psat6g061320 Pisum sativum HOM05D000104 ORTHO05D008568 1.2e-16 90.9 121 44.6
Lj5g0019569 Lotus japonicus HOM05D000104 ORTHO05D008568 1.5e-16 90.5 128 43.8
Nn1g06879 Nelumbo nucifera HOM05D000104 ORTHO05D008568 1.5e-16 90.5 130 44.6
TAR362G0397 Trochodendron aralioides HOM05D000104 ORTHO05D008568 2.0e-16 90.1 127 43.3
Actinidia07307 Actinidia chinensis HOM05D000104 ORTHO05D008568 3.4e-16 89.4 127 41.7
EL10As5g23480 Beta vulgaris HOM05D000104 ORTHO05D008568 4.5e-16 89.0 146 41.1
COL.COLO4_04021 Corchorus olitorius HOM05D000104 ORTHO05D008568 5.8e-16 88.6 126 42.9
MBI07_g16902_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D008568 5.8e-16 88.6 148 40.5
Thecc.01G255700 Theobroma cacao HOM05D000104 ORTHO05D008568 5.8e-16 88.6 143 38.5
AL3G53180 Arabidopsis lyrata HOM05D000104 ORTHO05D008568 7.6e-16 88.2 130 43.8
CANSAT01G0880 Cannabis sativa HOM05D000104 ORTHO05D008568 7.6e-16 88.2 177 37.3
TAR633G1665 Trochodendron aralioides HOM05D000104 ORTHO05D008568 1.3e-15 87.4 156 37.8
FvH4_2g21200 Fragaria vesca HOM05D000104 ORTHO05D008568 1.7e-15 87.0 190 36.8
Medtr1g069755 Medicago truncatula HOM05D000104 ORTHO05D008568 1.7e-15 87.0 122 42.6
Ciclev10018548m.g Citrus clementina HOM05D000104 ORTHO05D008568 2.2e-15 86.7 142 41.5
MD05G1194600 Malus domestica HOM05D000104 ORTHO05D008568 2.2e-15 86.7 130 43.8
Potri.005G226500 Populus trichocarpa HOM05D000104 ORTHO05D008568 2.2e-15 86.7 148 39.9
Sabra05G0174900 Salix brachista HOM05D000104 ORTHO05D008568 2.2e-15 86.7 163 39.3
Atru.chr5.1731 Acer truncatum HOM05D000104 ORTHO05D008568 2.9e-15 86.3 127 42.5
vmacro02676 Vaccinium macrocarpon HOM05D000104 ORTHO05D008568 2.9e-15 86.3 127 42.5
FAN24G3224 Fragaria x ananassa HOM05D000104 ORTHO05D008568 3.8e-15 85.9 190 36.8
Lalb_Chr02g0152571 Lupinus albus HOM05D000104 ORTHO05D008568 3.8e-15 85.9 122 41.8
Ah.02g112060 Amaranthus hybridus HOM05D000104 ORTHO05D008568 4.9e-15 85.5 129 41.9
Lj1C69T5 Lonicera japonica HOM05D000104 ORTHO05D008568 4.9e-15 85.5 151 38.4
arahy.Tifrunner.gnm1.ann1.Y72JU7 Arachis hypogaea HOM05D000104 ORTHO05D008568 6.4e-15 85.1 167 34.1
FAN20G0134 Fragaria x ananassa HOM05D000104 ORTHO05D008568 8.4e-15 84.7 190 36.3
Sc24g0003180 Simmondsia chinensis HOM05D000104 ORTHO05D008568 8.4e-15 84.7 128 38.3
Ca_09670_v3 Cicer arietinum L. HOM05D000104 ORTHO05D008568 1.1e-14 84.3 165 37.6
Rhsim13G0036300 Rhododendron simsii HOM05D000104 ORTHO05D008568 1.1e-14 84.3 127 42.5
Gohir.D08G209100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 1.4e-14 84.0 151 39.1
Gorai.004G221400 Gossypium raimondii HOM05D000104 ORTHO05D008568 1.4e-14 84.0 151 39.7
PSO210G7140 Papaver somniferum HOM05D000104 ORTHO05D008568 1.4e-14 84.0 144 41.0
arahy.Tifrunner.gnm1.ann1.37VRS2 Arachis hypogaea HOM05D000104 ORTHO05D008568 1.9e-14 83.6 167 34.1
Nitab4.5_0007062g0050 Nicotiana tabacum HOM05D000104 ORTHO05D008568 1.9e-14 83.6 154 41.6
Hund09608 Selenicereus undatus HOM05D000104 ORTHO05D008568 1.9e-14 83.6 146 39.0
Cfa002445 Carpinus fangiana HOM05D000104 ORTHO05D008568 2.4e-14 83.2 151 38.4
Glyma.13G124600 Glycine max HOM05D000104 ORTHO05D008568 2.4e-14 83.2 162 35.8
Oeu039673.1 Olea europaea HOM05D000104 ORTHO05D008568 2.4e-14 83.2 114 41.2
RcHm_v2.0_Chr6g0287701 Rosa chinensis HOM05D000104 ORTHO05D008568 2.4e-14 83.2 151 39.7
Sp1g16640 Schrenkiella parvula HOM05D000104 ORTHO05D008568 2.4e-14 83.2 145 39.3
Migut.N02212 Erythranthe guttata HOM05D000104 ORTHO05D008568 3.2e-14 82.8 154 37.7
TWI12G0577 Tripterygium wilfordii HOM05D000104 ORTHO05D008568 3.2e-14 82.8 148 38.5
ATR0736G017 Amborella trichopoda HOM05D000104 ORTHO05D008568 5.5e-14 82.0 182 35.2
AUR62011855 Chenopodium quinoa HOM05D000104 ORTHO05D008568 5.5e-14 82.0 150 37.3
TPR.G5864 Trifolium pratense HOM05D000104 ORTHO05D008568 5.5e-14 82.0 136 41.2
CSS0013286 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D008568 7.1e-14 81.6 129 38.8
MSTRG.12529 Avicennia marina HOM05D000104 ORTHO05D008568 1.2e-13 80.9 137 38.0
Gohir.A08G191100 Gossypium hirsutum HOM05D000104 ORTHO05D008568 1.2e-13 80.9 175 34.3
Prupe.8G221300 Prunus persica HOM05D000104 ORTHO05D008568 1.2e-13 80.9 187 34.2
BcaC06g32613 Brassica carinata HOM05D000104 ORTHO05D008568 1.6e-13 80.5 149 39.6
C07p56300 Brassica napus HOM05D000104 ORTHO05D008568 1.6e-13 80.5 149 39.6
BolC7t46109H Brassica oleracea HOM05D000104 ORTHO05D008568 1.6e-13 80.5 149 39.6
FAN15G3096 Fragaria x ananassa HOM05D000104 ORTHO05D008568 1.6e-13 80.5 190 35.3
PGSC0003DMG400010292 Solanum tuberosum HOM05D000104 ORTHO05D008568 1.6e-13 80.5 154 38.3
Cc01_g18180 Coffea canephora HOM05D000104 ORTHO05D008568 2.7e-13 79.7 163 35.6
Os01g0102800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D008568 2.7e-13 79.7 102 43.1
Phvul.007G191600 Phaseolus vulgaris HOM05D000104 ORTHO05D008568 2.7e-13 79.7 168 38.7
CAN.G1855.3 Capsicum annuum HOM05D000104 ORTHO05D008568 3.5e-13 79.3 154 40.3
Haze_24651 Corylus avellana HOM05D000104 ORTHO05D008568 3.5e-13 79.3 186 34.4
CsaV3_3G022110 Cucumis sativus L. HOM05D000104 ORTHO05D008568 3.5e-13 79.3 150 37.3
FAN27G2543 Fragaria x ananassa HOM05D000104 ORTHO05D008568 3.5e-13 79.3 190 34.7
AT2G18760 Arabidopsis thaliana HOM05D000104 ORTHO05D008568 4.6e-13 79.0 160 38.1
QL09p039652 Quercus lobata HOM05D000104 ORTHO05D008568 4.6e-13 79.0 159 37.7
CARHR109360 Cardamine hirsuta HOM05D000104 ORTHO05D008568 6.0e-13 78.6 148 40.5
Hma1.2p1_0576F.1_g181920 Hydrangea macrophylla HOM05D000104 ORTHO05D008568 7.9e-13 78.2 127 39.4
VMungo0720G2644 Vigna mungo HOM05D000104 ORTHO05D008568 7.9e-13 78.2 154 39.0
Zm00001eb127010 Zea mays HOM05D000104 ORTHO05D008568 7.9e-13 78.2 151 37.1
A03p58270 Brassica napus HOM05D000104 ORTHO05D008568 1.0e-12 77.8 157 37.6
BraA03t14890Z Brassica rapa HOM05D000104 ORTHO05D008568 1.0e-12 77.8 157 37.6
Cpa.g.sc165.16 Carica papaya HOM05D000104 ORTHO05D008568 1.0e-12 77.8 158 36.1
SMO011G0002 Selaginella moellendorffii HOM05D000104 ORTHO05D008568 1.0e-12 77.8 112 42.9
Sopen09g028210 Solanum pennellii HOM05D000104 ORTHO05D008568 1.0e-12 77.8 154 37.0
DCAR_018495 Daucus carota HOM05D000104 ORTHO05D008568 1.8e-12 77.0 148 37.2
HPP92_009781 Vanilla planifolia HOM05D000104 ORTHO05D008568 2.3e-12 76.6 132 40.9
Aa31LG2G21880 Aethionema arabicum HOM05D000104 ORTHO05D008568 3.0e-12 76.3 159 35.2
Thhalv10022523m.g Eutrema salsugineum HOM05D000104 ORTHO05D008568 3.0e-12 76.3 159 37.1
SGA_v2.0_scaffold42G16196 Striga asiatica HOM05D000104 ORTHO05D008568 3.0e-12 76.3 109 42.2
Carub.0003s3303 Capsella rubella HOM05D000104 ORTHO05D008568 3.9e-12 75.9 163 36.2
MELO3C012868.2 Cucumis melo HOM05D000104 ORTHO05D008568 5.1e-12 75.5 150 37.3
Peaxi162Scf00624g00319 Petunia axillaris HOM05D000104 ORTHO05D008568 6.7e-12 75.1 199 34.2
HanXRQChr10g0280821 Helianthus annuus HOM05D000104 ORTHO05D008568 8.7e-12 74.7 152 36.2
SalBow6G2605 Salvia bowleyana HOM05D000104 ORTHO05D008568 1.5e-11 73.9 148 35.1
unitig_46.g18342 Utricularia gibba HOM05D000104 ORTHO05D008568 1.5e-11 73.9 122 36.9
Eucgr.K03253 Eucalyptus grandis HOM05D000104 ORTHO05D008568 1.9e-11 73.6 100 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1591 Anthoceros agrestis HOM05D000104 ORTHO05D008568 2.5e-11 73.2 154 39.0
ClCG00G001480 Citrullus lanatus HOM05D000104 ORTHO05D008568 4.3e-11 72.4 163 34.4
ClCG07G001160 Citrullus lanatus HOM05D000104 ORTHO05D008568 4.3e-11 72.4 163 34.4
Aqoxy2G03678 Aquilegia oxysepala HOM05D000104 ORTHO05D008568 7.4e-11 71.6 153 37.9
Sed0001144 Sechium edule HOM05D000104 ORTHO05D008568 9.6e-11 71.2 151 35.8
SEGI_32379 Sequoiadendron giganteum HOM05D000104 ORTHO05D008568 1.6e-10 70.5 160 36.9
GSVIVG01028359001 Vitis vinifera HOM05D000104 ORTHO05D008568 2.1e-10 70.1 127 36.2
Actinidia30155 Actinidia chinensis HOM05D000104 ORTHO05D030898 1.8e-09 67.0 106 39.6
Duzib138G0599 Durio zibethinus HOM05D000104 ORTHO05D008568 3.1e-09 66.2 143 35.0
THA.LOC104804044 Tarenaya hassleriana HOM05D000104 ORTHO05D008568 3.1e-09 66.2 119 38.7
ECA247G0422 Erigeron canadensis HOM05D000104 ORTHO05D008568 4.0e-09 65.9 152 36.2
Lsat_1_v5_gn_9_10521 Lactuca sativa HOM05D000104 ORTHO05D008568 4.0e-09 65.9 151 35.1
AUR62024700 Chenopodium quinoa HOM05D000104 ORTHO05D008568 9.0e-09 64.7 105 38.1
PGR044G2555 Punica granatum HOM05D000104 ORTHO05D008568 9.0e-09 64.7 187 30.5
SHI09765 Sapria himalayana HOM05D000104 ORTHO05D008568 4.9e-07 58.9 119 36.1


User provided reference genes

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