Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 0.0e+00 1524.2 769 100.0
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 0.0e+00 1518.4 769 99.6
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 0.0e+00 1518.4 769 99.6
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 0.0e+00 1394.4 764 91.5
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 4.0e-302 1041.2 720 71.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 5.6e-288 994.2 722 67.9
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 3.2e-283 978.4 688 70.3
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 3.2e-283 978.4 677 70.5
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 1.2e-282 976.5 677 70.6
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 1.6e-282 976.1 688 70.3
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 2.7e-282 975.3 675 71.7
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 3.5e-282 974.9 677 70.3
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 4.6e-282 974.5 677 70.2
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 6.0e-282 974.2 676 70.3
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 7.8e-282 973.8 677 70.3
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 1.0e-281 973.4 677 70.0
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 3.0e-281 971.8 704 68.5
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 3.9e-281 971.5 676 70.4
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.1e-281 971.1 675 70.8
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 6.6e-281 970.7 677 70.6
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 1.1e-280 969.9 688 69.9
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 1.1e-280 969.9 704 68.3
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.1e-280 969.9 677 70.8
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.5e-280 969.5 677 70.5
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 1.9e-280 969.1 675 70.4
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 2.5e-280 968.8 677 70.9
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.5e-280 968.8 688 68.0
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 3.3e-280 968.4 677 69.7
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 3.3e-280 968.4 675 69.9
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 5.6e-280 967.6 675 70.4
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 5.6e-280 967.6 677 69.7
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 5.6e-280 967.6 675 70.7
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 7.3e-280 967.2 677 70.0
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 7.3e-280 967.2 677 70.6
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 7.3e-280 967.2 675 70.4
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 7.3e-280 967.2 675 69.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 9.6e-280 966.8 676 70.1
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 9.6e-280 966.8 676 70.0
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 9.6e-280 966.8 675 69.6
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.6e-279 966.1 675 69.5
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 2.1e-279 965.7 676 69.7
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 2.8e-279 965.3 676 70.4
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 2.8e-279 965.3 675 69.6
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 3.6e-279 964.9 677 69.7
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 3.6e-279 964.9 676 69.4
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 4.7e-279 964.5 677 69.3
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 4.7e-279 964.5 677 70.2
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 4.7e-279 964.5 677 69.6
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 6.2e-279 964.1 674 69.4
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 8.1e-279 963.8 690 68.4
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 8.1e-279 963.8 676 69.5
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 1.1e-278 963.4 676 70.1
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.1e-278 963.4 675 69.9
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 1.8e-278 962.6 676 69.4
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 1.8e-278 962.6 677 69.3
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 1.8e-278 962.6 676 69.7
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 2.4e-278 962.2 677 69.9
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.0e-278 961.4 677 69.7
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 5.2e-278 961.1 675 69.9
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 5.2e-278 961.1 675 69.5
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 8.9e-278 960.3 684 69.2
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.2e-277 959.9 677 69.6
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 2.6e-277 958.7 677 70.2
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 3.4e-277 958.4 675 68.4
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 4.4e-277 958.0 684 69.0
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 5.8e-277 957.6 675 69.3
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 5.8e-277 957.6 677 69.1
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 7.6e-277 957.2 676 69.1
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 9.9e-277 956.8 707 67.3
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 9.9e-277 956.8 675 69.5
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 1.3e-276 956.4 677 69.0
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 2.2e-276 955.7 676 69.2
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 2.9e-276 955.3 744 65.5
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 2.9e-276 955.3 677 68.4
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 3.8e-276 954.9 672 70.5
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 4.9e-276 954.5 675 68.1
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 6.4e-276 954.1 675 69.2
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 6.4e-276 954.1 675 69.2
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 6.4e-276 954.1 708 66.7
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 8.4e-276 953.7 675 68.1
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 8.4e-276 953.7 677 68.2
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 1.4e-275 953.0 677 69.0
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 9.3e-275 950.3 660 70.6
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 9.3e-275 950.3 678 68.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 1.2e-274 949.9 677 68.4
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 2.1e-274 949.1 675 69.0
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 2.1e-274 949.1 740 64.3
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 3.5e-274 948.3 677 68.4
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 4.6e-274 948.0 735 64.1
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 4.6e-274 948.0 677 68.1
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 4.6e-274 948.0 676 68.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 1.0e-273 946.8 675 68.6
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 1.7e-273 946.0 677 68.1
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 1.7e-273 946.0 676 67.8
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 2.3e-273 945.7 677 69.3
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 3.9e-273 944.9 677 68.1
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 3.9e-273 944.9 677 67.9
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 3.9e-273 944.9 676 68.6
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 3.9e-273 944.9 748 63.6
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 5.1e-273 944.5 677 67.9
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 5.1e-273 944.5 677 67.9
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 5.1e-273 944.5 658 70.5
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 1.1e-272 943.3 681 68.6
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 1.5e-272 943.0 677 67.8
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 1.9e-272 942.6 677 67.9
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 1.9e-272 942.6 707 66.2
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 7.3e-272 940.6 677 67.5
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.3e-271 939.9 660 69.8
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 1.2e-269 933.3 683 67.1
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 9.9e-269 930.2 680 68.7
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 2.9e-268 928.7 675 68.1
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 3.2e-267 925.2 710 64.8
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 4.2e-267 924.9 686 66.5
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 3.9e-265 918.3 773 61.1
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 5.6e-264 914.4 675 67.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 7.6e-261 904.0 677 66.9
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 7.1e-259 897.5 593 72.7
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 4.6e-258 894.8 684 64.2
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 2.5e-256 889.0 660 67.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 4.3e-256 888.3 676 65.8
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 7.4e-256 887.5 677 65.0
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 4.2e-251 871.7 675 65.6
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 1.5e-248 863.2 675 63.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.2e-242 843.6 990 48.0
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 5.9e-237 824.7 546 72.5
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 5.0e-236 821.6 678 59.7
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.8e-223 779.2 684 58.3
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.4e-222 776.9 678 59.7
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 3.0e-217 759.2 678 58.1
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-214 750.4 592 64.2
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 7.2e-211 738.0 592 63.7
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.2e-199 699.9 685 53.3
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 2.0e-181 640.2 782 46.3
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 8.4e-151 538.5 629 49.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.3e-139 499.6 306 76.8
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.2e-125 454.9 250 86.0
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.7e-119 434.5 360 59.2
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 5.1e-116 422.9 301 69.1
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.7e-114 416.8 228 86.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 4.1e-89 333.6 306 54.2
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 6.1e-85 319.7 295 54.9
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.4e-76 292.0 236 59.3
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.2e-69 268.9 150 84.0
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.7e-66 258.5 241 54.8
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.2e-66 258.1 218 59.2
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.9e-65 255.0 378 39.9
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.3e-63 248.8 300 50.3
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.5e-62 244.6 297 49.2
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-61 241.5 126 88.9
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.2e-57 226.1 130 83.8
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 8.6e-55 219.5 114 89.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.1e-54 219.2 172 59.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.1e-46 192.6 260 43.8
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.4e-44 184.9 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.6e-38 162.9 137 63.5
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.6e-37 161.0 383 35.2
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.1e-36 159.5 147 56.5
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 1.9e-30 138.7 99 65.7
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.7e-26 125.6 122 53.3
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 8.4e-26 123.2 70 82.9
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 2.1e-24 118.6 69 79.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 7.9e-24 116.7 83 68.7
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 7.9e-24 116.7 61 85.2
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 3.0e-23 114.8 223 30.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 3.7e-21 107.8 105 51.4
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 3.8e-18 97.8 99 53.5
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 6.5e-18 97.1 68 72.1
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.1e-14 86.3 63 68.3
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.5e-14 85.1 50 76.0
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 6.3e-13 80.5 71 57.7
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.1e-12 79.7 56 71.4
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.0e-10 73.2 42 78.6
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 1.3e-10 72.8 38 92.1
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 4.2e-09 67.8 39 82.1


User provided reference genes

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