Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 3.6e-91 338.2 165 100.0
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 6.8e-50 201.1 150 69.3
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 3.8e-32 142.1 150 51.3
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 5.3e-26 121.7 149 41.6
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 2.6e-25 119.4 149 39.6
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.9e-24 115.9 149 41.6
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.9e-24 115.9 149 41.6
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 1.1e-23 114.0 149 40.3
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-23 113.6 163 39.3
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.4e-23 113.6 149 40.3
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.9e-23 113.2 149 39.6
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.9e-23 113.2 160 38.1
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-23 112.8 149 40.9
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.4e-23 112.8 160 38.1
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.4e-23 112.8 160 38.1
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.4e-23 112.8 149 36.9
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.2e-23 112.5 153 41.8
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.2e-23 112.5 153 41.8
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 3.2e-23 112.5 149 38.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 4.2e-23 112.1 149 40.3
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 7.1e-23 111.3 145 41.4
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 9.3e-23 110.9 149 37.6
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 9.3e-23 110.9 149 40.3
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.1e-22 109.8 162 35.2
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 2.1e-22 109.8 149 40.3
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.7e-22 109.4 149 38.9
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.5e-22 109.0 128 45.3
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 4.6e-22 108.6 149 38.9
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 4.6e-22 108.6 145 39.3
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 4.6e-22 108.6 149 40.3
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 6.0e-22 108.2 149 39.6
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 7.9e-22 107.8 149 37.6
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 7.9e-22 107.8 149 38.9
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.0e-21 107.5 146 39.7
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-21 107.1 153 39.9
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-21 107.1 149 40.3
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.3e-21 107.1 149 40.3
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.3e-21 107.1 149 37.6
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.3e-21 107.1 149 39.6
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.3e-21 107.1 145 38.6
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.3e-21 107.1 146 38.4
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.8e-21 106.7 149 39.6
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.3e-21 106.3 153 39.2
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 2.3e-21 106.3 156 35.9
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.3e-21 106.3 149 38.9
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.0e-21 105.9 159 35.8
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 3.0e-21 105.9 149 38.9
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.9e-21 105.5 149 37.6
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 3.9e-21 105.5 145 38.6
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 3.9e-21 105.5 149 39.6
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.9e-21 105.5 149 39.6
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.9e-21 105.5 149 39.6
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.9e-21 105.5 149 39.6
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.9e-21 105.5 145 39.3
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.9e-21 105.5 149 38.9
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 5.1e-21 105.1 149 36.9
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 5.1e-21 105.1 149 37.6
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 5.1e-21 105.1 149 37.6
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 6.7e-21 104.8 149 36.2
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 6.7e-21 104.8 149 38.9
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 8.7e-21 104.4 149 38.3
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 8.7e-21 104.4 149 36.9
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 8.7e-21 104.4 149 36.2
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.1e-20 104.0 152 36.8
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 1.1e-20 104.0 145 38.6
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.1e-20 104.0 149 36.2
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 1.5e-20 103.6 149 37.6
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.5e-20 103.6 149 36.2
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.5e-20 103.6 149 37.6
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.9e-20 103.2 149 36.2
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 2.5e-20 102.8 149 37.6
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 2.5e-20 102.8 145 37.9
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 3.3e-20 102.4 145 38.6
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 3.3e-20 102.4 145 38.6
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.3e-20 102.4 146 39.7
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 4.3e-20 102.1 149 36.9
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.3e-20 102.1 149 35.6
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.6e-20 101.7 149 36.9
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.6e-20 101.7 146 39.0
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 7.4e-20 101.3 149 36.9
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 7.4e-20 101.3 149 36.2
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 7.4e-20 101.3 152 35.5
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 9.6e-20 100.9 149 34.9
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 9.6e-20 100.9 149 36.2
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 9.6e-20 100.9 149 36.9
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.3e-19 100.5 149 36.9
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-19 100.5 149 38.9
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.3e-19 100.5 149 34.9
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.3e-19 100.5 154 35.1
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.3e-19 100.5 143 37.1
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.3e-19 100.5 149 36.9
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.6e-19 100.1 149 36.9
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.6e-19 100.1 146 39.0
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.6e-19 100.1 149 36.2
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 2.8e-19 99.4 149 38.3
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 3.6e-19 99.0 149 34.9
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 3.6e-19 99.0 145 35.2
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.6e-19 99.0 149 35.6
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 4.8e-19 98.6 149 38.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 6.2e-19 98.2 145 35.2
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 6.2e-19 98.2 145 37.2
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 8.1e-19 97.8 145 35.9
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 8.1e-19 97.8 145 35.2
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 8.1e-19 97.8 145 35.2
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 8.1e-19 97.8 145 35.2
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.1e-18 97.4 145 35.2
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.1e-18 97.4 150 34.0
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.4e-18 97.1 149 37.6
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.8e-18 96.7 145 35.2
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.8e-18 96.7 145 34.5
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 2.4e-18 96.3 145 35.2
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.4e-18 96.3 145 35.2
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.4e-18 96.3 149 36.2
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 2.4e-18 96.3 145 33.1
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 4.0e-18 95.5 145 34.5
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 5.3e-18 95.1 145 34.5
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.2e-17 94.0 145 36.6
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 2.0e-17 93.2 149 35.6
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 2.6e-17 92.8 76 51.3
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 3.4e-17 92.4 77 50.6
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 9.9e-17 90.9 149 36.9
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 9.9e-17 90.9 144 36.1
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 9.9e-17 90.9 144 36.1
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.3e-16 90.5 84 52.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 3.8e-16 89.0 132 33.3
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 3.8e-16 89.0 163 30.7
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 3.8e-16 89.0 149 36.2
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 2.4e-15 86.3 75 50.7
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.3e-15 84.3 149 31.5
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 1.2e-14 84.0 75 52.0
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 3.5e-14 82.4 149 31.5
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.8e-13 80.1 146 34.2
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 3.0e-13 79.3 145 33.8
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 8.7e-13 77.8 149 34.2
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.3e-10 68.6 153 29.4
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-08 63.2 78 42.3
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.4e-07 60.5 144 29.9
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 7.1e-07 58.2 134 29.1
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 7.1e-07 58.2 177 28.2
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.6e-06 57.0 56 44.6
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.7e-06 56.2 115 31.3


User provided reference genes

Program Settings