Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.4e-245 851.7 412 100.0
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 9.2e-96 354.8 369 48.5
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.1e-95 353.6 369 48.2
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 2.7e-95 353.2 371 47.4
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 1.7e-94 350.5 362 50.0
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 6.6e-94 348.6 388 45.9
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.9e-93 347.1 359 48.7
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 2.5e-93 346.7 388 46.6
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 3.3e-93 346.3 366 48.6
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 3.3e-93 346.3 388 46.1
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 5.6e-93 345.5 359 48.5
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 5.6e-93 345.5 388 46.1
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 9.5e-93 344.7 368 47.6
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.1e-92 343.6 388 46.1
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.1e-92 343.6 388 46.1
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 2.1e-92 343.6 360 47.5
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 3.6e-92 342.8 362 47.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 3.6e-92 342.8 389 46.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 4.7e-92 342.4 361 48.5
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.7e-92 342.4 404 46.3
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.2e-92 342.0 366 48.9
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 6.2e-92 342.0 363 48.5
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 8.1e-92 341.7 365 47.4
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 8.1e-92 341.7 368 47.3
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.4e-91 340.9 362 47.8
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.4e-91 340.9 365 47.9
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.3e-91 340.1 389 47.3
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.3e-91 340.1 367 46.9
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 4.0e-91 339.3 371 47.4
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 6.8e-91 338.6 359 48.5
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.2e-90 337.8 364 50.8
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.0e-90 337.0 367 47.7
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 2.6e-90 336.7 365 47.7
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 3.4e-90 336.3 366 48.6
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 3.4e-90 336.3 367 48.2
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 4.4e-90 335.9 360 47.8
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 5.8e-90 335.5 365 47.1
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 9.9e-90 334.7 375 46.9
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-89 334.3 364 48.4
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.7e-89 334.0 361 47.6
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.2e-89 333.6 363 47.4
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 2.9e-89 333.2 366 45.6
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 4.9e-89 332.4 364 48.1
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 4.9e-89 332.4 367 47.1
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 6.4e-89 332.0 409 43.5
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 1.1e-88 331.3 366 48.4
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 1.4e-88 330.9 406 45.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.4e-88 330.9 366 47.5
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.9e-88 330.5 361 45.7
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.4e-88 330.1 362 47.5
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 3.2e-88 329.7 363 46.6
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 4.1e-88 329.3 380 46.6
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 5.4e-88 328.9 366 48.4
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 5.4e-88 328.9 417 44.6
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 7.1e-88 328.6 362 46.4
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.1e-88 328.6 364 49.5
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 7.1e-88 328.6 366 47.8
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 9.2e-88 328.2 368 47.6
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.1e-87 327.0 368 47.6
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.1e-87 327.0 367 46.6
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 2.1e-87 327.0 362 46.7
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.7e-87 326.6 366 47.8
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 2.7e-87 326.6 390 44.4
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.6e-87 325.9 366 45.6
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 6.0e-87 325.5 362 47.8
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 7.8e-87 325.1 416 44.5
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.0e-86 324.7 408 42.6
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-86 323.9 371 46.1
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.7e-86 323.9 389 44.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 2.3e-86 323.6 413 43.3
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.9e-86 322.8 364 47.8
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 3.9e-86 322.8 368 46.7
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 5.1e-86 322.4 381 43.8
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 6.6e-86 322.0 368 45.7
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 8.6e-86 321.6 360 47.2
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.5e-85 320.9 366 47.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.9e-85 320.5 366 46.2
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.9e-85 320.5 368 47.0
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 2.5e-85 320.1 374 45.5
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 3.3e-85 319.7 364 45.9
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 7.3e-85 318.5 365 44.9
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 9.6e-85 318.2 362 45.9
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 9.6e-85 318.2 362 45.9
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 9.6e-85 318.2 363 46.6
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.8e-84 316.6 396 43.4
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 3.6e-84 316.2 353 46.2
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.2e-84 315.5 393 44.0
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 6.2e-84 315.5 369 43.6
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 6.2e-84 315.5 366 47.0
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 4.0e-83 312.8 420 41.0
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.0e-83 312.8 360 45.0
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 5.2e-83 312.4 375 45.3
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 8.9e-83 311.6 368 44.3
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.2e-82 311.2 360 45.0
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.0e-82 310.5 325 47.4
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.6e-82 310.1 412 41.7
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 2.9e-81 306.6 422 41.7
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 4.9e-81 305.8 363 44.4
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 8.4e-81 305.1 366 44.0
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 3.2e-80 303.1 383 44.1
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 5.4e-80 302.4 391 42.7
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 2.7e-79 300.1 359 44.3
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.5e-77 293.5 366 43.2
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.3e-77 293.1 377 43.5
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.3e-76 291.2 366 43.4
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 4.8e-76 289.3 350 44.6
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-74 284.6 393 41.0
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-74 284.6 396 40.9
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.4e-74 283.1 385 42.1
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 4.4e-74 282.7 393 41.5
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 7.6e-74 282.0 392 41.8
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 2.2e-73 280.4 362 41.2
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.9e-73 279.3 368 41.6
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 3.2e-72 276.6 392 40.6
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 4.6e-71 272.7 370 40.8
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.3e-70 270.4 391 40.9
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 6.6e-70 268.9 387 40.8
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.9e-69 267.3 335 42.4
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 5.6e-69 265.8 323 43.0
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 9.6e-69 265.0 330 41.5
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 2.1e-68 263.8 457 35.9
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 7.6e-66 255.4 352 41.8
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 4.9e-65 252.7 544 32.2
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.2e-64 249.6 526 32.7
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.5e-64 249.2 386 39.9
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.5e-64 249.2 367 38.7
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 8.7e-62 241.9 291 43.6
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.1e-61 241.5 234 51.3
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 4.3e-61 239.6 234 50.9
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 9.6e-61 238.4 234 49.1
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 9.0e-59 231.9 269 48.7
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.0e-57 228.4 236 49.6
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 3.8e-57 226.5 296 42.6
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 4.9e-57 226.1 367 38.4
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.5e-56 223.8 380 34.7
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.3e-52 211.5 311 36.3
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 3.7e-52 209.9 195 54.4
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 3.7e-52 209.9 254 43.7
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.6e-47 194.5 209 51.2
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.6e-44 184.5 371 32.3
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.8e-44 183.7 206 46.6
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 7.7e-42 175.6 388 31.4
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 8.8e-38 162.2 302 35.1
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.1e-35 153.3 373 30.8
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 3.4e-34 150.2 546 24.4
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 3.6e-31 140.2 347 31.4
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 6.1e-31 139.4 350 30.9
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 9.1e-27 125.6 274 29.6
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.2e-23 115.2 114 46.5
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 8.0e-23 112.5 192 38.5
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.6e-15 88.2 120 40.0
Pp3c5_16980 Physcomitrium patens HOM05D004534 ORTHO05D314990 2.6e-13 80.9 211 29.4
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 2.2e-12 77.8 106 37.7
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 7.0e-11 72.8 59 59.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 7.7e-10 69.3 81 43.2
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.3e-09 68.6 44 68.2
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.1e-08 65.5 62 48.4
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 7.2e-08 62.8 74 45.9
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.2e-06 56.6 38 63.2


User provided reference genes

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