Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.1e-215 751.5 382 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 3.1e-122 442.6 343 66.5
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.3e-112 410.6 338 63.3
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 8.0e-110 401.4 368 59.2
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.1e-108 397.5 357 57.7
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 3.3e-108 396.0 362 58.6
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 7.4e-108 394.8 343 60.6
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 9.7e-108 394.4 335 61.5
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 4.8e-107 392.1 362 58.3
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 8.2e-107 391.3 371 57.1
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.8e-106 390.2 343 59.8
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.8e-106 390.2 339 59.6
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.1e-106 389.4 368 57.3
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 9.1e-106 387.9 364 58.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.2e-105 387.5 362 58.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.0e-105 386.7 330 61.2
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.6e-105 386.3 330 60.0
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.6e-105 386.3 361 56.5
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.5e-105 386.0 339 59.6
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 4.5e-105 385.6 373 54.7
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 4.5e-105 385.6 365 56.2
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 7.7e-105 384.8 374 55.9
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 7.7e-105 384.8 341 57.8
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 7.7e-105 384.8 374 55.9
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 7.7e-105 384.8 337 60.2
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.0e-104 384.4 361 56.0
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.3e-104 384.0 371 55.5
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.7e-104 383.6 366 57.7
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.7e-104 383.6 327 62.1
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 2.2e-104 383.3 337 60.8
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 2.2e-104 383.3 330 60.6
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 2.9e-104 382.9 329 61.4
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.9e-104 382.9 354 56.8
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 3.8e-104 382.5 326 60.1
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 3.8e-104 382.5 326 60.1
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.8e-104 382.5 380 56.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 5.0e-104 382.1 360 58.1
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 6.5e-104 381.7 369 55.6
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.5e-103 380.6 326 61.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.9e-103 380.2 360 56.1
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.2e-103 379.4 342 59.4
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 4.2e-103 379.0 337 59.9
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 4.2e-103 379.0 337 59.9
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.2e-102 377.5 333 58.6
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.1e-102 376.7 337 59.1
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 2.1e-102 376.7 328 60.1
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.1e-102 376.7 337 59.3
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 6.1e-102 375.2 373 55.5
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 6.1e-102 375.2 337 59.3
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 8.0e-102 374.8 337 57.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 8.0e-102 374.8 398 52.5
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 8.0e-102 374.8 325 60.0
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.8e-101 373.6 345 56.5
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 2.3e-101 373.2 329 58.7
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 2.3e-101 373.2 337 59.3
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 3.0e-101 372.9 337 59.6
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 3.0e-101 372.9 359 56.3
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 4.0e-101 372.5 361 55.4
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 6.8e-101 371.7 337 59.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 6.8e-101 371.7 337 57.9
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 8.8e-101 371.3 348 55.5
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.2e-100 370.9 329 58.4
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 2.6e-100 369.8 337 57.6
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 4.4e-100 369.0 329 57.8
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.3e-99 367.5 331 58.9
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.7e-99 367.1 329 59.0
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.7e-99 367.1 355 53.8
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 8.3e-99 364.8 337 57.3
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 8.3e-99 364.8 368 54.1
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.4e-98 364.0 334 57.2
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 3.1e-98 362.8 325 56.6
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 3.1e-98 362.8 325 59.4
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 5.4e-98 362.1 368 53.3
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 3.5e-97 359.4 391 51.9
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 3.2e-95 352.8 360 54.2
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 7.2e-95 351.7 410 51.2
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.2e-94 350.9 299 60.2
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.6e-94 350.5 418 50.0
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 3.4e-92 342.8 356 53.1
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 2.8e-91 339.7 396 50.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 1.4e-90 337.4 297 59.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.1e-90 335.9 285 59.3
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.5e-89 332.8 280 61.1
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 5.0e-88 328.9 329 54.7
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.9e-87 327.0 357 50.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.2e-87 325.9 316 55.1
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 9.5e-87 324.7 355 51.8
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.6e-86 323.9 363 52.1
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 3.0e-85 319.7 333 52.9
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.2e-83 313.5 268 60.8
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 1.1e-82 311.2 302 55.6
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 4.1e-82 309.3 244 65.6
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 3.5e-81 306.2 266 61.7
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 3.5e-81 306.2 255 63.1
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.9e-81 305.4 342 51.2
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 6.6e-80 302.0 296 52.4
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.9e-79 300.4 235 64.7
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.9e-79 300.4 232 64.2
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 6.8e-77 292.0 267 58.8
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.2e-76 291.2 243 61.7
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 4.1e-74 282.7 243 60.5
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 4.1e-74 282.7 243 60.5
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 3.5e-73 279.6 342 46.8
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.7e-72 277.3 305 50.8
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.2e-70 271.2 210 66.2
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 5.2e-69 265.8 227 63.0
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 7.3e-63 245.4 304 46.4
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.8e-61 240.7 458 37.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 5.2e-61 239.2 197 62.4
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.3e-51 208.0 375 37.6
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.2e-50 203.4 229 48.9
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.8e-38 163.7 144 59.0
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.8e-38 163.7 336 34.2
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.9e-35 152.9 215 44.2
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 4.2e-34 149.8 160 48.8
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.6e-30 137.9 113 61.1
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.9e-27 127.1 307 31.9
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.2e-26 123.2 154 44.8
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.7e-24 115.9 117 50.4
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-20 105.1 135 43.7
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.0e-20 104.4 91 60.4
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.8e-19 100.1 110 50.9
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 3.0e-16 90.5 75 60.0
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.9e-15 87.8 107 46.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 3.3e-15 87.0 73 58.9
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 3.7e-14 83.6 109 45.9
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 5.0e-11 73.2 82 52.4
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 2.7e-09 67.4 160 31.9
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.5e-07 61.6 103 35.0
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 2.2e-06 57.8 125 32.8
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 2.2e-06 57.8 125 32.8
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 2.8e-06 57.4 127 32.3
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 6.3e-06 56.2 127 29.1
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 8.2e-06 55.8 123 31.7
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 8.2e-06 55.8 123 32.5


User provided reference genes

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