Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 5.7e-267 923.7 475 100.0
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.0e-98 364.8 451 41.7
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.5e-97 360.9 467 43.0
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 3.8e-93 346.3 453 42.2
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 1.4e-92 344.4 448 43.5
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.2e-92 343.2 448 43.1
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.7e-91 340.1 451 41.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.8e-90 337.4 428 43.5
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 6.7e-90 335.5 458 42.1
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.1e-89 334.7 457 39.2
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.9e-89 334.0 445 41.1
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 5.6e-89 332.4 430 43.3
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 5.6e-89 332.4 459 41.6
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 7.4e-89 332.0 447 42.3
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.3e-88 331.3 450 42.7
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.6e-88 330.9 467 41.3
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 2.1e-88 330.5 449 39.4
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 2.1e-88 330.5 438 43.6
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.7e-88 329.7 430 40.2
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.7e-88 329.7 490 40.0
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 6.2e-88 328.9 415 43.1
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.1e-87 328.2 455 39.3
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.4e-87 327.8 429 42.2
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.4e-87 327.8 429 42.2
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.4e-87 327.8 462 39.6
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.8e-87 327.4 445 41.6
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.1e-87 326.6 461 39.9
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 4.0e-87 326.2 459 39.7
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 5.3e-87 325.9 459 39.9
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 6.9e-87 325.5 457 39.4
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 9.0e-87 325.1 477 39.4
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.2e-86 324.7 423 41.6
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.5e-86 324.3 457 38.9
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.0e-86 323.9 457 40.0
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.0e-86 323.9 458 39.3
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.0e-86 323.9 423 41.1
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 2.0e-86 323.9 459 39.7
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.6e-86 323.6 458 39.3
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 3.4e-86 323.2 449 40.1
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 3.4e-86 323.2 442 42.1
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 3.4e-86 323.2 445 39.3
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 4.5e-86 322.8 450 42.4
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 4.5e-86 322.8 445 39.3
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 4.5e-86 322.8 426 40.6
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 4.5e-86 322.8 461 39.5
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 5.8e-86 322.4 456 39.0
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.8e-86 322.4 457 40.0
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 7.6e-86 322.0 476 38.9
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 7.6e-86 322.0 436 40.1
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.3e-85 321.2 448 39.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.3e-85 321.2 463 40.2
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 1.7e-85 320.9 445 39.6
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.7e-85 320.9 457 39.8
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.7e-85 320.9 433 40.0
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.9e-85 320.1 410 41.0
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 3.8e-85 319.7 460 39.6
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 6.5e-85 318.9 448 39.3
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.1e-84 318.2 473 39.3
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.1e-84 318.2 419 42.7
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.4e-84 317.8 457 39.2
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-84 317.8 457 39.2
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.9e-84 317.4 474 39.9
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 2.5e-84 317.0 445 41.1
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 2.5e-84 317.0 459 37.7
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 7.1e-84 315.5 459 37.5
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.2e-83 314.7 455 39.6
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.6e-83 314.3 457 38.7
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.6e-83 314.3 473 38.9
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.7e-83 313.5 453 40.4
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 4.6e-83 312.8 447 39.1
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 6.0e-83 312.4 439 41.0
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.3e-82 311.2 420 41.4
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 5.1e-82 309.3 445 38.2
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 3.3e-81 306.6 413 40.9
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 9.7e-81 305.1 419 41.1
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.6e-80 304.3 456 40.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 8.2e-80 302.0 450 37.1
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.4e-79 301.2 469 38.4
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.8e-79 300.8 431 39.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 1.8e-79 300.8 431 39.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 2.4e-79 300.4 431 39.4
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 4.1e-79 299.7 431 39.2
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 5.3e-79 299.3 449 36.7
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 5.3e-79 299.3 419 38.4
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.2e-78 298.1 415 42.4
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 3.4e-78 296.6 436 39.2
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 3.4e-78 296.6 418 40.7
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.4e-78 296.6 415 40.5
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 7.6e-78 295.4 343 44.0
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 6.5e-77 292.4 424 39.2
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.4e-76 291.2 343 44.0
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 7.2e-76 288.9 431 38.1
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 9.3e-76 288.5 470 37.7
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 2.3e-74 283.9 425 38.4
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 3.9e-74 283.1 457 37.6
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 7.4e-73 278.9 443 37.2
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 6.9e-71 272.3 449 38.5
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 2.6e-70 270.4 403 39.7
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.3e-69 268.1 426 36.9
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 3.8e-69 266.5 431 36.7
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 3.8e-69 266.5 453 35.5
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 8.5e-69 265.4 339 44.0
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.1e-68 265.0 421 37.3
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 1.1e-68 265.0 448 36.6
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 5.5e-68 262.7 399 38.3
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 7.2e-68 262.3 427 36.3
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.1e-65 255.0 374 39.0
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.8e-63 247.7 404 36.1
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 2.4e-63 247.3 382 36.6
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.8e-58 228.8 352 38.4
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 9.7e-49 198.7 273 39.9
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 4.8e-40 169.9 472 30.7
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.2e-38 165.2 244 38.1
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 4.5e-38 163.3 272 36.8
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 7.7e-38 162.5 334 33.5
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 8.0e-35 152.5 168 45.8
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.5e-33 146.0 221 37.1
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.4e-31 141.0 221 37.1
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 7.8e-30 136.0 243 34.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.0e-29 135.6 316 30.1
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.3e-29 135.2 203 34.0
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.5e-28 131.7 170 42.4
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.2e-25 122.1 132 45.5
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.5e-25 121.7 350 26.6
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 9.8e-25 119.0 328 28.7
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 3.0e-21 107.5 132 42.4
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 6.6e-21 106.3 85 56.5
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.2e-19 99.8 129 42.6
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 6.4e-16 89.7 159 32.7
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.9e-15 88.2 74 54.1
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 6.8e-10 69.7 151 31.8
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-08 65.5 160 30.6
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 2.9e-08 64.3 90 41.1


User provided reference genes

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