Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_21030 Physcomitrium patens HOM05D005244 ORTHO05D006539 0.0e+00 1870.1 957 100.0
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 3.8e-270 935.3 957 50.2
Mapoly0125s0017 Marchantia polymorpha HOM05D005244 ORTHO05D006539 1.7e-265 919.8 913 50.4
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 1.2e-263 913.7 932 49.8
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 1.6e-263 913.3 920 50.5
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 4.3e-261 905.2 920 50.2
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 9.5e-261 904.0 910 50.0
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 2.8e-260 902.5 922 50.3
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 2.8e-260 902.5 922 50.3
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 2.8e-260 902.5 955 49.1
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 8.0e-260 901.0 922 50.2
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 1.0e-259 900.6 951 48.9
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 8.9e-259 897.5 957 49.2
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 1.5e-258 896.7 973 48.4
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.5e-258 896.7 917 49.7
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 7.5e-258 894.4 954 48.2
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 9.8e-258 894.0 916 49.7
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 4.9e-257 891.7 960 48.1
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 8.3e-257 891.0 949 48.6
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 1.8e-256 889.8 955 48.3
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 5.4e-256 888.3 957 47.8
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 7.0e-256 887.9 916 49.1
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 1.2e-255 887.1 913 49.9
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 2.7e-255 885.9 952 48.3
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 3.5e-255 885.6 960 48.4
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 3.5e-255 885.6 922 49.9
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 3.5e-255 885.6 916 49.3
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 5.9e-255 884.8 931 48.3
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 1.0e-254 884.0 921 49.9
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 1.0e-254 884.0 954 47.6
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 1.7e-254 883.2 923 49.5
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 2.3e-254 882.9 951 47.7
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 3.0e-254 882.5 929 49.0
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 3.9e-254 882.1 921 49.9
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 5.0e-254 881.7 951 47.7
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 8.6e-254 880.9 919 48.3
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 7.3e-253 877.9 931 48.0
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 7.3e-253 877.9 916 49.7
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 4.7e-252 875.2 917 49.6
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 8.0e-252 874.4 916 49.7
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 3.1e-251 872.5 916 49.3
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 8.9e-251 870.9 917 49.4
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 1.5e-250 870.2 939 48.5
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 3.4e-250 869.0 956 48.3
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 3.4e-250 869.0 939 48.5
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 3.4e-250 869.0 939 48.5
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 7.5e-250 867.8 956 47.6
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 7.5e-250 867.8 926 48.4
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 1.3e-249 867.1 916 49.0
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 2.2e-249 866.3 916 47.9
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 1.1e-248 864.0 950 48.3
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 1.1e-248 864.0 956 47.5
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 1.9e-248 863.2 932 47.7
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 1.9e-248 863.2 965 47.9
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 4.1e-248 862.1 924 48.1
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 1.6e-247 860.1 867 49.6
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 2.0e-247 859.8 967 46.6
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 4.6e-247 858.6 952 47.9
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 1.5e-245 853.6 936 47.5
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 3.3e-245 852.4 958 47.7
CDE05G2480 Ceratophyllum demersum HOM05D005244 ORTHO05D006539 2.1e-244 849.7 918 47.2
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 1.1e-243 847.4 948 46.9
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 6.8e-243 844.7 890 48.2
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 8.9e-243 844.3 965 46.1
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 3.7e-241 839.0 862 48.8
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 1.1e-240 837.4 953 45.4
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 1.4e-240 837.0 922 46.7
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 1.9e-240 836.6 961 46.0
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 1.2e-239 833.9 917 47.4
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 2.1e-239 833.2 1053 43.6
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 3.5e-239 832.4 957 45.8
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.3e-238 830.5 881 47.9
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 3.0e-238 829.3 1042 43.2
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 8.6e-238 827.8 951 45.7
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 1.5e-237 827.0 919 44.9
Hund03212 Selenicereus undatus HOM05D005244 ORTHO05D006539 5.2e-235 818.5 951 45.1
vmacro20731 Vaccinium macrocarpon HOM05D005244 ORTHO05D006539 1.3e-233 813.9 1058 43.3
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 1.7e-233 813.5 950 46.0
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 1.1e-232 810.8 1065 42.7
SMO367G0058 Selaginella moellendorffii HOM05D005244 ORTHO05D006539 3.2e-232 809.3 908 45.9
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 9.2e-232 807.7 954 45.5
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 5.1e-230 802.0 1156 39.4
Rhsim01G0102600 Rhododendron simsii HOM05D005244 ORTHO05D006539 7.3e-229 798.1 990 44.4
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 2.4e-227 793.1 860 48.3
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 2.0e-226 790.0 954 44.7
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 5.8e-226 788.5 896 46.2
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 2.4e-224 783.1 852 46.7
Oeu021241.1 Olea europaea HOM05D005244 ORTHO05D006539 9.0e-219 764.6 883 45.8
HPP92_015784 Vanilla planifolia HOM05D005244 ORTHO05D006539 4.8e-212 742.3 930 44.5
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 4.3e-205 719.2 968 42.6
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 1.2e-199 701.0 808 45.9
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 3.9e-198 696.0 926 42.3
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 7.6e-194 681.8 920 42.5
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 1.8e-190 670.6 936 41.2
HPP92_015795 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.0e-169 601.7 776 43.9
CARHR271920 Cardamine hirsuta HOM05D005244 ORTHO05D006539 2.9e-161 573.5 565 53.1
Hund19348 Selenicereus undatus HOM05D005244 ORTHO05D006539 3.8e-153 546.6 920 38.5
CBR_g22899 Chara braunii HOM05D005244 ORTHO05D006539 8.9e-142 508.8 949 34.4
Sed0023758 Sechium edule HOM05D005244 ORTHO05D006539 1.6e-135 488.0 506 50.8
CBR_g983 Chara braunii HOM05D005244 ORTHO05D006539 2.9e-132 477.2 1059 31.0
Cpa.g.sc91.77 Carica papaya HOM05D005244 ORTHO05D006539 1.3e-129 468.4 432 56.0
ClCG03G011620 Citrullus lanatus HOM05D005244 ORTHO05D006539 1.1e-115 422.2 494 48.0
HPP92_015814 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.3e-112 410.6 666 39.3
SEGI_37412 Sequoiadendron giganteum HOM05D005244 ORTHO05D006539 2.6e-109 401.0 392 51.3
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.6e-106 391.7 420 46.0
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 3.6e-103 380.6 458 44.1
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 7.6e-101 372.9 457 43.5
MCO06G232 Micromonas commoda HOM05D005244 ORTHO05D006539 2.8e-95 354.4 995 28.1
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 2.9e-92 344.4 458 42.1
Cre16.g680450 Chlamydomonas reinhardtii HOM05D005244 ORTHO05D006539 4.0e-86 323.9 1054 28.0
SHI03158 Sapria himalayana HOM05D005244 ORTHO05D006539 3.3e-80 304.3 409 42.8
HPP92_015817 Vanilla planifolia HOM05D005244 ORTHO05D006539 4.1e-78 297.4 663 32.6
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 1.9e-75 288.5 372 39.5
Lalb_Chr22g0361681 Lupinus albus HOM05D005244 ORTHO05D006539 9.1e-70 269.6 286 46.5
Os02g0469200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 5.2e-57 227.3 220 46.4
Duzib170G1117 Durio zibethinus HOM05D005244 ORTHO05D006539 1.2e-45 189.5 162 50.6
Hma1.2p1_0394F.1_g143220 Hydrangea macrophylla HOM05D005244 ORTHO05D006539 4.7e-42 177.6 202 46.0
Os03g0570200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 9.8e-40 169.9 200 45.5
QL01p000012 Quercus lobata HOM05D005244 ORTHO05D006539 5.9e-37 160.6 221 38.9
HPP92_015815 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.3e-33 148.7 136 47.8
CiPaw.07G231500 Carya illinoinensis HOM05D005244 ORTHO05D006539 6.8e-33 147.1 203 39.9
Zm00001eb175510 Zea mays HOM05D005244 ORTHO05D006539 2.8e-31 141.7 124 49.2
Zm00001eb016210 Zea mays HOM05D005244 ORTHO05D006539 4.9e-31 141.0 130 46.9
Zm00001eb270590 Zea mays HOM05D005244 ORTHO05D006539 6.3e-31 140.6 128 46.9
Zm00001eb357680 Zea mays HOM05D005244 ORTHO05D006539 5.4e-30 137.5 119 49.6
MBI16_g00817_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 2.8e-26 125.2 257 31.9
HPP92_015816 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.5e-21 108.2 76 52.6
Zm00001eb035880 Zea mays HOM05D005244 ORTHO05D006539 5.0e-20 104.4 90 47.8
Zm00001eb063080 Zea mays HOM05D005244 ORTHO05D006539 1.6e-18 99.4 89 49.4
SalBow8G4401 Salvia bowleyana HOM05D005244 ORTHO05D006539 6.2e-18 97.4 155 34.8
SalBow7G2907 Salvia bowleyana HOM05D005244 ORTHO05D006539 8.0e-18 97.1 155 34.8
HPP92_015796 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.2e-16 93.2 136 38.2
SalBow6G0925 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.3e-15 89.7 187 31.0
SalBow2G0201 Salvia bowleyana HOM05D005244 ORTHO05D006539 2.2e-15 89.0 110 40.0
HanXRQChr14g0448901 Helianthus annuus HOM05D005244 ORTHO05D006539 2.9e-15 88.6 104 40.4
A06p40390 Brassica napus HOM05D007118 ORTHO05D008957 1.2e-13 83.2 390 23.3
BraA06t26957Z Brassica rapa HOM05D007118 ORTHO05D008957 1.2e-13 83.2 390 23.3
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 1.6e-13 82.8 355 23.4
C07p37660 Brassica napus HOM05D007118 ORTHO05D008957 1.0e-12 80.1 391 22.8
BolC7t44283H Brassica oleracea HOM05D007118 ORTHO05D008957 1.0e-12 80.1 391 22.8
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 5.0e-12 77.8 391 22.5
SHI03161 Sapria himalayana HOM05D005244 ORTHO05D006539 2.5e-11 75.5 84 46.4
Zm00001eb385570 Zea mays HOM05D007118 ORTHO05D008957 3.3e-11 75.1 383 22.2
SHI04174 Sapria himalayana HOM05D007118 ORTHO05D008957 5.6e-11 74.3 333 24.6
CARHR151700 Cardamine hirsuta HOM05D007118 ORTHO05D008957 1.2e-10 73.2 389 23.1
ATR1120G196 Amborella trichopoda HOM05D007118 ORTHO05D008957 1.6e-10 72.8 300 24.7
Sp2g17370 Schrenkiella parvula HOM05D007118 ORTHO05D008957 1.6e-10 72.8 392 21.9
CDE04G1934 Ceratophyllum demersum HOM05D007118 ORTHO05D008957 2.1e-10 72.4 326 23.0
Carub.0005s0727 Capsella rubella HOM05D007118 ORTHO05D008957 8.1e-10 70.5 394 22.3
THA.LOC104805448 Tarenaya hassleriana HOM05D007118 ORTHO05D008957 8.1e-10 70.5 392 22.2
Lj2g0024860 Lotus japonicus HOM05D007118 ORTHO05D008957 1.8e-09 69.3 319 22.9
Aa31LG2G4490 Aethionema arabicum HOM05D007118 ORTHO05D008957 2.3e-09 68.9 401 23.4
Rhsim08G0066600 Rhododendron simsii HOM05D007118 ORTHO05D008957 5.2e-09 67.8 392 22.2
AT3G28720 Arabidopsis thaliana HOM05D007118 ORTHO05D008957 6.8e-09 67.4 395 22.0
Cpa.g.sc14.37 Carica papaya HOM05D007118 ORTHO05D008957 6.8e-09 67.4 393 20.1
Actinidia10548 Actinidia chinensis HOM05D007118 ORTHO05D008957 8.9e-09 67.0 320 20.9
TPR.G4266 Trifolium pratense HOM05D007118 ORTHO05D008957 1.5e-08 66.2 373 22.5
Lalb_Chr02g0159561 Lupinus albus HOM05D007118 ORTHO05D008957 2.6e-08 65.5 333 21.6
Lsat_1_v5_gn_1_86520 Lactuca sativa HOM05D005244 ORTHO05D029965 4.4e-08 64.7 70 48.6
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 4.4e-08 64.7 49 63.3
PGR083G1725 Punica granatum HOM05D007118 ORTHO05D008957 5.8e-08 64.3 269 22.7
SMO244G0043 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.7e-07 62.8 265 23.8
SMO244G0004 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 2.2e-07 62.4 156 26.9
SMO244G0083 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 2.2e-07 62.4 156 26.9
SMO071G0001 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 6.4e-07 60.8 265 23.4
Potri.017G078700 Populus trichocarpa HOM05D007118 ORTHO05D008957 8.3e-07 60.5 396 21.5
Psat1g078560 Pisum sativum HOM05D007118 ORTHO05D008957 1.1e-06 60.1 251 25.5
Lsat_1_v5_gn_3_57281 Lactuca sativa HOM05D003275 ORTHO05D006539 1.4e-06 59.7 47 55.3
PGR004G0637 Punica granatum HOM05D004819 ORTHO05D005654 1.9e-06 59.3 351 20.2
Sabra17G0069800 Salix brachista HOM05D007118 ORTHO05D008957 1.9e-06 59.3 279 21.9
Potri.004G123900 Populus trichocarpa HOM05D007118 ORTHO05D008957 2.4e-06 58.9 284 23.9
Lsat_1_v5_gn_4_83721 Lactuca sativa HOM05D000104 ORTHO05D008354 7.1e-06 57.4 40 60.0


User provided reference genes

Program Settings