Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.2e-280 969.1 480 100.0
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.8e-231 805.8 479 83.7
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.2e-181 639.4 447 73.4
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.7e-173 613.2 445 71.0
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 9.0e-143 511.1 425 61.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.2e-133 479.9 442 56.3
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.3e-121 439.5 418 54.3
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 3.1e-71 273.5 244 54.1
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 5.4e-71 272.7 240 53.8
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.6e-70 271.2 243 51.4
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.7e-69 267.7 240 52.9
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.7e-69 267.7 245 52.7
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 2.3e-69 267.3 239 52.7
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.9e-69 266.9 240 52.9
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 2.9e-69 266.9 240 53.3
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.1e-68 265.0 239 52.3
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.1e-68 265.0 244 50.8
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.9e-68 264.2 240 51.7
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 2.5e-68 263.8 246 51.2
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 4.3e-68 263.1 240 51.2
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 9.5e-68 261.9 243 50.2
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 9.5e-68 261.9 240 51.2
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 9.5e-68 261.9 243 50.6
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.1e-67 260.8 240 51.2
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 2.8e-67 260.4 240 51.2
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 4.7e-67 259.6 239 51.5
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 6.1e-67 259.2 243 50.6
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 6.1e-67 259.2 240 50.0
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 1.0e-66 258.5 239 51.5
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 4.0e-66 256.5 239 50.2
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 5.2e-66 256.1 244 50.4
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 8.9e-66 255.4 239 49.4
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.2e-65 255.0 239 48.5
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 2.0e-65 254.2 239 50.6
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.0e-65 254.2 297 43.8
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 2.6e-65 253.8 240 50.4
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 3.4e-65 253.4 245 50.2
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 3.4e-65 253.4 239 47.7
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 5.7e-65 252.7 246 49.6
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 5.7e-65 252.7 236 52.1
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.8e-65 251.9 239 48.1
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 9.8e-65 251.9 245 47.8
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.3e-64 251.5 243 49.8
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.3e-64 251.5 236 50.8
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.7e-64 251.1 244 49.6
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 1.7e-64 251.1 242 49.2
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.2e-64 250.8 239 47.7
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 2.9e-64 250.4 233 51.9
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 2.9e-64 250.4 244 49.6
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 3.7e-64 250.0 239 50.2
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 3.7e-64 250.0 243 49.8
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 3.7e-64 250.0 248 48.0
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 6.4e-64 249.2 239 47.7
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.1e-63 248.4 242 49.6
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.8e-63 247.7 239 51.0
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.4e-63 247.3 245 48.6
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 4.1e-63 246.5 242 49.2
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-63 246.1 265 46.8
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 9.2e-63 245.4 245 48.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 9.2e-63 245.4 244 49.2
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 1.6e-62 244.6 239 46.9
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 2.0e-62 244.2 243 47.7
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.7e-62 243.8 245 48.6
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 2.7e-62 243.8 243 47.7
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 7.8e-62 242.3 239 50.6
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 7.8e-62 242.3 238 50.8
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 1.0e-61 241.9 224 50.0
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.0e-61 241.9 243 46.9
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.3e-61 241.5 239 48.1
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.7e-61 241.1 240 47.1
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 2.3e-61 240.7 243 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.0e-61 240.4 219 53.4
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 3.0e-61 240.4 242 47.1
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 3.9e-61 240.0 243 47.7
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 3.9e-61 240.0 243 46.9
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 3.9e-61 240.0 244 47.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 6.6e-61 239.2 287 43.2
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.5e-60 238.0 245 49.0
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 3.3e-60 236.9 240 46.2
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 4.3e-60 236.5 242 48.3
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.3e-60 236.5 239 46.0
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 5.6e-60 236.1 242 46.3
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 9.5e-60 235.3 239 47.7
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.2e-59 235.0 245 46.5
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.6e-59 234.6 239 47.3
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.6e-59 234.6 235 47.2
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 2.1e-59 234.2 240 47.9
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 4.7e-59 233.0 212 51.4
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 2.3e-58 230.7 212 50.9
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 4.0e-58 229.9 213 51.2
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 5.2e-58 229.6 213 51.2
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.5e-57 228.0 245 46.1
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 2.0e-57 227.6 213 50.2
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 5.8e-57 226.1 213 50.7
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 6.4e-56 222.6 267 41.6
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 2.4e-55 220.7 239 45.2
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 7.8e-54 215.7 239 44.8
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.3e-53 214.9 239 44.8
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.0e-53 213.8 200 50.5
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 3.9e-53 213.4 199 49.7
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.5e-52 211.5 237 43.9
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 4.3e-52 209.9 199 49.2
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.6e-51 208.0 216 46.3
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 6.2e-51 206.1 243 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1044 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.1e-51 205.7 249 50.6
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 8.1e-51 205.7 192 48.4
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 4.0e-50 203.4 215 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.9e-50 202.2 196 51.5
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 1.2e-49 201.8 271 39.1
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 2.6e-49 200.7 196 48.0
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 3.4e-49 200.3 193 49.2
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 4.4e-49 199.9 193 48.7
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 2.9e-48 197.2 188 48.9
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 4.9e-48 196.4 193 48.2
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 2.4e-47 194.1 258 41.1
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.7e-45 188.0 175 48.6
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 2.5e-44 184.1 232 40.9
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 5.6e-44 183.0 165 50.3
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-43 181.8 159 51.6
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.4e-42 178.3 182 47.8
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 6.8e-42 176.0 164 49.4
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.3e-40 171.8 239 38.1
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.7e-40 171.4 197 44.7
SEGI_06932 Sequoiadendron giganteum HOM05D004805 ORTHO05D018109 4.1e-39 166.8 187 47.6
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 9.2e-39 165.6 215 40.5
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 2.7e-38 164.1 241 38.2
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.5e-36 157.5 188 44.1
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 3.6e-35 153.7 223 39.0
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 4.7e-35 153.3 241 38.2
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.5e-33 148.3 119 58.8
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 4.4e-33 146.7 142 47.2
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.4e-31 141.7 172 41.9
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.4e-31 141.0 233 34.8
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.4e-31 141.0 208 36.5
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 2.3e-29 134.4 193 38.3
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.5e-28 131.0 166 39.8
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 2.6e-25 120.9 106 50.9
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 7.6e-25 119.4 106 48.1
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.7e-22 110.9 103 45.6
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.7e-21 108.2 104 47.1
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 2.3e-21 107.8 100 49.0
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.2e-17 95.5 161 36.6
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.0e-17 94.7 86 47.7
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 2.6e-17 94.4 103 43.7
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-15 87.4 82 47.6
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.5e-14 84.0 72 55.6
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 7.9e-14 82.8 374 23.0
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 6.2e-11 73.2 240 25.8
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.4e-10 71.2 82 45.1
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.0e-08 65.9 156 30.8
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.8e-08 63.9 45 57.8
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 6.5e-08 63.2 65 47.7
PGSC0003DMG400037364 Solanum tuberosum HOM05D002537 ORTHO05D002751 2.5e-07 61.2 126 28.6
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 2.5e-07 61.2 141 29.8
CBR_g40490 Chara braunii HOM05D000601 ORTHO05D000407 3.2e-07 60.8 174 28.2
PGSC0003DMG400037032 Solanum tuberosum HOM05D002537 ORTHO05D002751 4.2e-07 60.5 126 27.8
Mapoly0001s0020 Marchantia polymorpha HOM05D002537 ORTHO05D002751 5.5e-07 60.1 118 30.5
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 9.3e-07 59.3 143 30.1
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.2e-06 58.9 144 29.9
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 2.1e-06 58.2 162 27.8
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 2.1e-06 58.2 102 28.4
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.1e-06 58.2 181 28.7
AagrBONN_evm.TU.Sc2ySwM_362.820 Anthoceros agrestis HOM05D002537 ORTHO05D004294 2.7e-06 57.8 129 27.1
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 3.5e-06 57.4 133 27.1
RcHm_v2.0_Chr4g0428941 Rosa chinensis HOM05D002537 ORTHO05D002751 6.0e-06 56.6 124 28.2
Duzib132G0792 Durio zibethinus HOM05D002537 ORTHO05D002751 7.9e-06 56.2 168 26.2


User provided reference genes

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