Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 0.0e+00 1179.5 742 100.0
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.1e-102 377.1 425 59.5
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 3.1e-102 377.1 425 59.5
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 3.8e-92 343.6 426 53.8
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 5.5e-91 339.7 422 53.3
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 9.4e-91 339.0 424 56.1
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 2.1e-90 337.8 433 55.0
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 3.6e-90 337.0 433 54.7
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 4.7e-90 336.7 420 52.6
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 8.0e-90 335.9 426 55.2
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.0e-89 335.5 429 54.5
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.3e-89 334.3 435 50.3
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 2.3e-89 334.3 421 52.7
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 4.0e-89 333.6 421 53.9
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 5.2e-89 333.2 435 51.7
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.2e-88 332.0 415 56.6
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.2e-88 332.0 434 51.6
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 1.5e-88 331.6 415 56.9
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 1.5e-88 331.6 424 52.4
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 2.6e-88 330.9 429 55.0
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 2.6e-88 330.9 426 52.3
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 3.4e-88 330.5 437 54.0
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 3.4e-88 330.5 431 53.4
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.7e-88 329.7 420 53.8
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.7e-88 329.7 420 56.2
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 7.5e-88 329.3 418 52.4
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 9.8e-88 328.9 415 53.0
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 2.2e-87 327.8 449 50.8
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 2.2e-87 327.8 429 53.1
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 2.8e-87 327.4 439 47.2
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 3.7e-87 327.0 434 53.2
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 3.7e-87 327.0 420 55.7
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 4.8e-87 326.6 421 53.4
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 6.3e-87 326.2 438 49.3
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.1e-86 325.5 410 55.1
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 1.4e-86 325.1 425 53.9
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 1.4e-86 325.1 429 54.5
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.8e-86 324.7 413 52.8
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.1e-86 323.9 432 50.9
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 3.1e-86 323.9 430 53.0
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 3.1e-86 323.9 438 51.8
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 5.4e-86 323.2 425 54.4
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 7.0e-86 322.8 434 50.5
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.2e-85 322.0 419 55.4
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 1.2e-85 322.0 441 49.2
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.2e-85 322.0 405 57.3
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 3.5e-85 320.5 432 48.1
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 3.5e-85 320.5 422 54.5
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 4.5e-85 320.1 432 47.7
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 5.9e-85 319.7 432 48.8
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 5.9e-85 319.7 415 58.1
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 1.3e-84 318.5 382 56.5
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 1.7e-84 318.2 424 47.9
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 2.2e-84 317.8 431 50.6
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 2.9e-84 317.4 423 55.3
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 2.9e-84 317.4 423 55.3
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 2.9e-84 317.4 419 53.9
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 3.8e-84 317.0 418 55.5
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 3.8e-84 317.0 419 56.1
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 3.8e-84 317.0 421 55.3
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 8.5e-84 315.8 413 55.2
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 8.5e-84 315.8 426 54.9
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-83 315.5 425 50.8
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.1e-83 315.5 419 56.3
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 1.1e-83 315.5 437 50.3
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 1.5e-83 315.1 421 53.4
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 1.9e-83 314.7 420 55.5
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 1.9e-83 314.7 436 53.7
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.5e-83 314.3 404 53.7
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 4.2e-83 313.5 413 55.2
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 5.5e-83 313.2 422 53.8
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 1.2e-82 312.0 442 52.3
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 1.8e-81 308.1 442 50.2
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 3.0e-81 307.4 415 54.5
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 4.0e-81 307.0 391 56.8
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 4.0e-81 307.0 417 54.7
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 2.2e-79 301.2 419 54.7
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.2e-79 301.2 421 53.2
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.8e-79 300.8 387 55.0
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 1.4e-78 298.5 413 53.8
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 3.1e-78 297.4 415 54.2
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 3.1e-78 297.4 400 52.2
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 2.3e-76 291.2 415 53.0
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 9.5e-75 285.8 360 58.1
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 1.0e-73 282.3 437 48.5
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 3.4e-72 277.3 462 45.7
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 2.2e-71 274.6 385 48.1
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 3.7e-71 273.9 432 50.2
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 3.2e-70 270.8 413 48.4
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 1.6e-69 268.5 382 53.7
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 2.0e-69 268.1 356 51.4
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.3e-68 265.4 417 51.1
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.1e-67 262.3 366 48.9
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.9e-67 261.5 442 44.1
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 6.1e-66 256.5 321 56.7
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 1.9e-62 245.0 615 36.4
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 2.0e-61 241.5 288 53.5
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.7e-60 238.4 282 54.6
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 4.0e-57 227.3 281 54.1
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 4.4e-56 223.8 294 52.4
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 7.5e-56 223.0 408 42.2
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 9.8e-56 222.6 321 51.1
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 1.4e-54 218.8 337 51.6
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 5.4e-54 216.9 417 46.5
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 2.1e-53 214.9 409 41.3
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 6.0e-53 213.4 281 49.1
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 4.3e-51 207.2 272 50.7
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 1.4e-49 202.2 297 46.5
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 1.5e-48 198.7 193 58.5
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 1.4e-46 192.2 553 37.3
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 3.9e-44 184.1 408 43.6
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 4.3e-43 180.6 301 46.2
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 5.8e-40 170.2 193 51.8
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 1.9e-35 155.2 390 30.5
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.4e-33 149.1 572 30.6
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 1.1e-30 139.4 182 59.9
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.3e-26 125.9 195 45.6
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 5.8e-24 117.1 103 59.2
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 8.4e-23 113.2 102 59.8
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 4.2e-22 110.9 306 41.5
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 9.6e-19 99.8 59 78.0
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.6e-18 99.0 87 63.2
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.8e-18 98.2 49 91.8
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 4.5e-16 90.9 186 47.8
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 7.6e-16 90.1 119 48.7
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 6.5e-15 87.0 111 62.2
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 6.0e-13 80.5 54 72.2
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 7.9e-13 80.1 95 71.6
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.8e-10 71.6 84 45.2
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 8.2e-10 70.1 112 42.9
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 5.0e-07 60.8 98 36.7


User provided reference genes

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