Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 5.1e-182 641.0 325 100.0
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.2e-109 400.6 277 70.0
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.4e-107 393.7 263 73.0
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.3e-105 387.1 265 70.9
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.7e-105 386.7 271 71.2
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.9e-105 386.0 263 70.3
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 3.8e-105 385.6 263 70.3
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 3.8e-105 385.6 283 66.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.8e-105 385.6 265 70.9
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 6.6e-105 384.8 263 70.3
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 6.6e-105 384.8 265 71.7
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 8.6e-105 384.4 266 70.7
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 8.6e-105 384.4 263 71.1
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.1e-104 384.0 265 69.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.1e-104 384.0 277 67.5
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.5e-104 383.6 263 69.2
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.9e-104 383.3 269 68.8
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.9e-104 383.3 304 65.8
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.9e-104 383.3 263 69.6
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 2.5e-104 382.9 266 69.2
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.5e-104 382.9 283 67.5
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 3.3e-104 382.5 263 70.0
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 3.3e-104 382.5 265 69.1
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 4.3e-104 382.1 269 68.8
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 4.3e-104 382.1 265 69.1
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 9.5e-104 380.9 263 70.0
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 9.5e-104 380.9 265 69.8
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.2e-103 380.6 289 66.1
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 1.6e-103 380.2 263 69.2
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 1.6e-103 380.2 263 69.2
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.6e-103 380.2 266 69.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.1e-103 379.8 263 70.3
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.1e-103 379.8 315 61.9
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.6e-103 379.0 289 65.4
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 4.7e-103 378.6 262 70.2
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 4.7e-103 378.6 287 66.2
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 6.1e-103 378.3 260 70.4
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 6.1e-103 378.3 266 69.5
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 6.1e-103 378.3 265 69.4
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 8.0e-103 377.9 270 68.9
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 8.0e-103 377.9 263 68.8
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.0e-102 377.5 265 67.9
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.4e-102 377.1 260 70.8
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.4e-102 377.1 265 67.9
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.4e-102 377.1 265 67.9
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.8e-102 376.7 263 69.6
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.8e-102 376.7 266 69.2
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 2.3e-102 376.3 278 68.0
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 3.0e-102 375.9 260 70.4
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 3.0e-102 375.9 277 66.1
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 5.2e-102 375.2 263 70.0
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 8.9e-102 374.4 310 61.3
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 8.9e-102 374.4 265 69.4
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.2e-101 374.0 263 69.2
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.2e-101 374.0 265 68.3
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.2e-101 374.0 263 68.4
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.5e-101 373.6 264 68.9
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.5e-101 373.6 266 68.8
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.0e-101 373.2 270 68.9
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 2.0e-101 373.2 265 70.2
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 2.0e-101 373.2 262 69.1
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 2.6e-101 372.9 294 62.9
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 2.6e-101 372.9 262 69.5
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.6e-101 372.9 264 67.0
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 2.6e-101 372.9 265 68.3
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.6e-101 372.9 308 63.0
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.6e-101 372.9 307 62.2
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 3.4e-101 372.5 265 67.9
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 4.4e-101 372.1 262 69.1
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 7.5e-101 371.3 267 67.0
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 7.5e-101 371.3 259 70.3
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.3e-100 370.5 266 67.7
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.7e-100 370.2 282 63.1
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.7e-100 370.2 265 69.1
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.2e-100 369.8 283 65.7
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 4.9e-100 368.6 265 67.5
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.9e-100 368.6 265 67.2
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 4.9e-100 368.6 263 68.1
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 1.1e-99 367.5 264 68.2
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-99 367.1 300 62.7
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.8e-99 366.7 310 61.6
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.8e-99 366.7 262 67.2
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.1e-99 365.5 321 59.5
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 7.0e-99 364.8 334 58.4
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.2e-99 364.4 262 67.2
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.2e-98 364.0 266 69.2
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.7e-98 362.8 299 61.9
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 3.5e-98 362.5 300 61.7
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.5e-98 362.5 299 62.2
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 7.8e-98 361.3 263 66.2
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.9e-97 359.0 262 64.9
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.9e-96 356.7 264 67.0
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.9e-96 356.7 275 63.3
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 4.3e-96 355.5 267 68.5
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.0e-94 350.9 252 67.9
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.4e-94 350.5 286 60.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.0e-94 349.0 289 60.2
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.2e-93 347.4 257 66.1
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.2e-93 347.4 285 61.1
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 3.4e-93 345.9 251 67.3
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 3.4e-93 345.9 266 63.9
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.2e-92 343.2 260 66.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.9e-91 340.1 289 58.8
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 4.1e-91 339.0 247 68.0
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 2.0e-90 336.7 229 70.7
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-88 330.9 252 64.7
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 5.6e-88 328.6 230 67.4
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.4e-86 323.9 315 54.0
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.5e-85 320.5 300 56.7
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 8.3e-84 314.7 265 59.6
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 4.1e-83 312.4 264 61.0
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.5e-80 303.1 349 47.6
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 4.3e-80 302.4 251 61.0
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 2.8e-79 299.7 250 61.2
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.4e-78 297.4 212 68.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 9.9e-77 291.2 261 57.5
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.2e-76 290.0 209 67.9
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 2.1e-74 283.5 210 64.3
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.1e-71 273.5 246 60.2
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.1e-70 269.6 265 53.6
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 4.0e-70 269.2 193 68.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.6e-69 266.5 182 68.7
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 3.9e-65 252.7 174 68.4
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.1e-65 252.3 238 55.0
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.9e-56 223.8 265 45.7
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.3e-56 223.0 183 59.0
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 7.4e-56 221.9 190 60.0
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.1e-54 216.5 209 52.6
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.4e-51 207.6 150 63.3
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.4e-51 206.8 142 67.6
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 7.1e-51 205.3 177 61.6
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.5e-48 196.8 175 58.9
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 4.0e-46 189.5 168 58.3
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 3.5e-42 176.4 144 59.7
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 6.7e-41 172.2 118 66.9
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 6.7e-41 172.2 118 66.9
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.3e-40 169.9 120 65.8
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.6e-39 167.5 120 64.2
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 6.3e-39 165.6 129 65.9
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.5e-37 161.0 144 59.0
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.0e-37 160.6 129 60.5
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 7.2e-35 152.1 114 65.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.2e-35 152.1 119 63.9
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 2.0e-29 134.0 108 59.3
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.1e-27 128.3 90 66.7
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 4.2e-27 126.3 262 34.0
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.5e-24 117.9 86 69.8
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.5e-24 117.9 86 70.9
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.8e-23 113.6 71 70.4
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 2.4e-22 110.5 88 59.1
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 4.5e-21 106.3 73 71.2
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 8.5e-20 102.1 237 32.5
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 5.2e-17 92.8 68 69.1
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 5.2e-17 92.8 75 65.3
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.4e-14 84.0 78 47.4
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 7.7e-13 79.0 56 66.1
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 7.7e-13 79.0 56 66.1
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 3.8e-12 76.6 82 52.4
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.6e-10 70.1 75 50.7
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 8.0e-10 68.9 46 71.7


User provided reference genes

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