Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 3.4e-189 664.8 332 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 2.9e-84 316.2 317 48.6
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.0e-81 307.8 304 52.3
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 4.5e-77 292.4 307 46.6
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 2.9e-76 289.7 303 48.5
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 8.5e-76 288.1 304 46.4
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 2.5e-75 286.6 304 47.4
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 3.2e-75 286.2 304 46.4
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 7.2e-75 285.0 304 45.7
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 7.2e-75 285.0 304 45.7
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.6e-74 283.9 326 43.6
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 1.6e-74 283.9 327 43.7
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 3.6e-74 282.7 308 46.4
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 8.0e-74 281.6 304 45.4
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.4e-73 280.8 308 45.1
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.8e-73 280.4 307 46.6
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 1.8e-73 280.4 303 45.5
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 3.0e-73 279.6 303 45.9
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 4.0e-73 279.3 314 45.2
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 5.2e-73 278.9 303 47.2
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 6.8e-73 278.5 300 45.0
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 6.8e-73 278.5 302 46.7
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-72 277.7 304 46.7
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.2e-72 277.7 302 45.4
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 2.6e-72 276.6 302 46.4
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 3.4e-72 276.2 303 44.9
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 4.4e-72 275.8 302 45.4
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 4.4e-72 275.8 303 45.5
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 7.5e-72 275.0 304 44.4
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 7.5e-72 275.0 303 45.9
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 7.5e-72 275.0 308 45.1
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 7.5e-72 275.0 308 45.1
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 9.8e-72 274.6 303 44.6
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.3e-71 274.2 307 45.3
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 1.7e-71 273.9 303 46.2
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.7e-71 273.9 307 44.3
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 3.7e-71 272.7 310 45.8
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 4.8e-71 272.3 303 45.9
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 8.3e-71 271.6 307 44.3
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.4e-70 270.8 304 44.4
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-69 267.7 307 45.3
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 1.2e-69 267.7 304 43.4
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 2.0e-69 266.9 304 43.4
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.7e-69 266.5 303 44.9
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.5e-69 266.2 302 44.7
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 3.5e-69 266.2 303 44.9
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 3.5e-69 266.2 302 44.4
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 4.5e-69 265.8 304 44.1
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.0e-68 264.6 302 44.7
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 1.3e-68 264.2 303 44.2
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.3e-68 264.2 302 43.7
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.9e-68 263.1 302 44.4
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 3.8e-68 262.7 303 43.9
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 3.8e-68 262.7 319 43.6
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 3.8e-68 262.7 303 44.6
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 8.6e-68 261.5 303 43.2
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 8.6e-68 261.5 306 43.8
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.1e-67 261.2 303 44.2
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 5.5e-67 258.8 303 44.2
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 9.5e-67 258.1 285 45.3
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 9.5e-67 258.1 320 41.9
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 1.2e-66 257.7 368 38.6
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 2.1e-66 256.9 302 44.4
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.1e-66 256.9 266 47.0
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 2.1e-66 256.9 266 48.1
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 3.6e-66 256.1 307 41.0
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 3.6e-66 256.1 308 41.9
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.4e-65 254.2 310 42.3
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 1.8e-65 253.8 306 43.8
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 4.0e-65 252.7 303 42.6
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 2.0e-64 250.4 303 42.6
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.1e-62 242.7 326 42.0
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.6e-61 240.7 309 42.1
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 7.8e-61 238.4 304 41.4
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.0e-60 238.0 341 40.5
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.8e-60 236.1 280 43.2
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.0e-60 235.7 207 53.1
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 5.6e-59 232.3 302 40.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 1.6e-58 230.7 302 40.1
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 3.6e-58 229.6 280 43.2
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.2e-56 224.6 276 42.0
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 2.0e-56 223.8 206 49.5
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 2.2e-55 220.3 308 37.3
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 9.2e-54 214.9 206 47.6
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 4.6e-53 212.6 236 46.2
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.9e-52 209.5 308 37.7
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 6.6e-52 208.8 249 43.4
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 6.6e-52 208.8 223 45.3
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.1e-50 203.8 176 52.8
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.6e-50 203.0 321 38.9
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 8.0e-50 201.8 290 37.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.1e-49 201.4 253 41.5
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.4e-49 201.1 242 41.7
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 3.4e-48 196.4 237 40.9
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 7.8e-45 185.3 295 38.3
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 7.3e-43 178.7 264 37.1
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 1.1e-41 174.9 215 42.8
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-40 171.4 193 45.1
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.9e-39 166.8 223 40.8
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 6.4e-39 165.6 211 39.3
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 8.6e-36 155.2 189 41.3
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.1e-33 146.7 209 38.3
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 4.0e-33 146.4 303 31.7
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 5.2e-33 146.0 196 39.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.8e-33 145.6 330 30.9
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.0e-32 144.1 126 52.4
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 9.9e-32 141.7 123 52.8
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 2.9e-31 140.2 131 49.6
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.5e-24 117.9 95 56.8
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 5.8e-24 115.9 93 63.4
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 5.8e-24 115.9 93 57.0
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 9.9e-24 115.2 186 32.8
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.4e-22 110.5 93 55.9
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 2.4e-22 110.5 89 58.4
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 8.7e-20 102.1 248 28.2
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.1e-19 101.7 79 60.8
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 4.8e-18 96.3 84 51.2
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.2e-16 91.7 79 51.9
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 2.4e-14 84.0 63 61.9
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 6.0e-13 79.3 170 31.8
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.8e-12 77.8 70 52.9
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 3.9e-12 76.6 115 38.3
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 6.7e-12 75.9 127 40.9
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.3e-11 73.2 138 30.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 3.1e-09 67.0 159 29.6
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 2.5e-06 57.4 103 30.1
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.5e-06 57.4 111 31.5


User provided reference genes

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