Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_380 Physcomitrium patens HOM05D004597 ORTHO05D005629 7.7e-86 320.5 164 100.0
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 4.5e-46 188.3 156 62.8
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 5.4e-31 138.3 157 49.0
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 7.0e-31 137.9 118 55.1
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 9.2e-31 137.5 101 58.4
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.1e-30 136.3 92 65.2
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 2.7e-30 136.0 102 60.8
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 2.7e-30 136.0 138 49.3
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 3.5e-30 135.6 113 55.8
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 3.5e-30 135.6 113 55.8
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 4.6e-30 135.2 103 59.2
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 6.0e-30 134.8 101 60.4
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 6.0e-30 134.8 85 67.1
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 6.0e-30 134.8 85 67.1
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 7.8e-30 134.4 101 61.4
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 1.0e-29 134.0 95 63.2
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 1.0e-29 134.0 100 63.0
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 1.3e-29 133.7 157 46.5
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 1.7e-29 133.3 85 64.7
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 2.3e-29 132.9 157 47.1
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 2.3e-29 132.9 91 63.7
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 3.0e-29 132.5 87 64.4
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 3.0e-29 132.5 95 60.0
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 3.0e-29 132.5 116 51.7
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 3.9e-29 132.1 102 58.8
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 3.9e-29 132.1 85 67.1
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 3.9e-29 132.1 103 58.3
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 3.9e-29 132.1 85 63.5
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 5.0e-29 131.7 87 64.4
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 6.6e-29 131.3 123 52.8
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 6.6e-29 131.3 125 51.2
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 8.6e-29 131.0 129 51.9
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 8.6e-29 131.0 89 62.9
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 1.1e-28 130.6 85 65.9
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 1.1e-28 130.6 87 64.4
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 1.1e-28 130.6 87 64.4
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 1.1e-28 130.6 87 64.4
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.5e-28 130.2 116 53.4
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 1.9e-28 129.8 138 49.3
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 1.9e-28 129.8 109 54.1
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 1.9e-28 129.8 159 45.3
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 1.9e-28 129.8 85 65.9
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 2.5e-28 129.4 85 65.9
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 2.5e-28 129.4 85 67.1
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 2.5e-28 129.4 152 45.4
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 3.3e-28 129.0 85 64.7
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 3.3e-28 129.0 139 46.8
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 3.3e-28 129.0 125 51.2
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 4.3e-28 128.6 117 52.1
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 4.3e-28 128.6 85 64.7
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 4.3e-28 128.6 85 64.7
TPR.G12546 Trifolium pratense HOM05D004597 ORTHO05D005629 4.3e-28 128.6 77 72.7
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 5.6e-28 128.3 104 56.7
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 5.6e-28 128.3 95 58.9
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 5.6e-28 128.3 152 45.4
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 5.6e-28 128.3 126 50.8
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 5.6e-28 128.3 139 48.9
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 5.6e-28 128.3 138 47.1
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 7.3e-28 127.9 110 53.6
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 7.3e-28 127.9 139 48.2
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 7.3e-28 127.9 139 48.2
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 7.3e-28 127.9 139 48.2
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 9.5e-28 127.5 118 53.4
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 1.2e-27 127.1 87 63.2
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 1.2e-27 127.1 85 64.7
Dinv42426 Davidia involucrata HOM05D004597 ORTHO05D005629 1.2e-27 127.1 131 48.9
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 1.2e-27 127.1 87 63.2
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 1.2e-27 127.1 77 70.1
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 1.2e-27 127.1 119 52.1
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 1.2e-27 127.1 154 45.5
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 1.2e-27 127.1 156 46.2
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 1.2e-27 127.1 152 44.7
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 1.6e-27 126.7 113 53.1
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 1.6e-27 126.7 127 48.8
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 1.6e-27 126.7 141 45.4
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 1.6e-27 126.7 85 63.5
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 1.6e-27 126.7 84 64.3
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 1.6e-27 126.7 110 53.6
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 2.1e-27 126.3 87 62.1
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 2.1e-27 126.3 137 46.7
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 2.1e-27 126.3 85 63.5
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.1e-27 126.3 153 45.8
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.1e-27 126.3 153 45.8
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 2.1e-27 126.3 100 56.0
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 2.8e-27 125.9 82 64.6
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 2.8e-27 125.9 139 46.8
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 2.8e-27 125.9 85 64.7
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 3.6e-27 125.6 124 50.8
QL11p002688 Quercus lobata HOM05D004597 ORTHO05D005629 4.7e-27 125.2 77 68.8
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 4.7e-27 125.2 87 62.1
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 6.2e-27 124.8 85 63.5
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 6.2e-27 124.8 150 46.0
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 6.2e-27 124.8 158 45.6
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 6.2e-27 124.8 85 63.5
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 6.2e-27 124.8 87 62.1
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 8.1e-27 124.4 153 47.7
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 1.1e-26 124.0 91 58.2
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 1.4e-26 123.6 144 45.8
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 1.4e-26 123.6 85 62.4
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.4e-26 123.6 149 46.3
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.4e-26 123.6 87 60.9
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 1.8e-26 123.2 123 50.4
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 2.3e-26 122.9 143 44.1
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 3.1e-26 122.5 153 45.1
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 4.0e-26 122.1 153 45.1
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 5.2e-26 121.7 148 43.9
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 8.9e-26 120.9 85 61.2
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 1.2e-25 120.6 156 44.2
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 1.2e-25 120.6 85 63.5
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 1.5e-25 120.2 157 43.9
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 2.0e-25 119.8 118 50.0
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 2.0e-25 119.8 123 52.0
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 2.6e-25 119.4 152 44.1
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 3.4e-25 119.0 121 50.4
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 7.5e-25 117.9 155 42.6
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 1.7e-24 116.7 153 43.8
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 2.2e-24 116.3 144 45.1
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 4.9e-24 115.2 97 55.7
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 1.4e-23 113.6 79 62.0
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 7.1e-23 111.3 181 37.6
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 9.2e-23 110.9 150 44.0
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 9.2e-23 110.9 85 58.8
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 1.6e-22 110.2 103 51.5
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 1.6e-22 110.2 103 51.5
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 1.6e-22 110.2 103 51.5
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 6.0e-22 108.2 104 50.0
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 6.0e-22 108.2 104 50.0
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 6.0e-22 108.2 150 43.3
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 5.1e-21 105.1 153 40.5
AagrBONN_evm.TU.Sc2ySwM_344.1889 Anthoceros agrestis HOM05D004597 ORTHO05D005629 8.1e-19 97.8 120 45.0
Lsat_1_v5_gn_5_125061 Lactuca sativa HOM05D004597 ORTHO05D005629 4.2e-15 85.5 50 70.0
THA.LOC104815153 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 5.4e-15 85.1 80 45.0
Ca_28838_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 6.0e-14 81.6 73 46.6
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 1.5e-12 77.0 62 51.6
Hma1.2p1_0169F.1_g074350 Hydrangea macrophylla HOM05D004597 ORTHO05D005629 3.3e-12 75.9 99 41.4
PRCOL_00006100 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 4.3e-12 75.5 80 43.8
vmacro17086 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.2e-11 73.9 47 61.7
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.2e-09 67.4 40 75.0
MELO3C030723.2 Cucumis melo HOM05D004597 ORTHO05D005629 7.6e-09 64.7 47 53.2
Cre06.g257601 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 3.8e-08 62.4 121 33.1
TPR.G7463 Trifolium pratense HOM05D004597 ORTHO05D005629 3.2e-07 59.3 38 68.4
unitig_22.g6577 Utricularia gibba HOM05D004597 ORTHO05D005629 4.2e-07 58.9 45 48.9
COL.COLO4_22132 Corchorus olitorius HOM05D004597 ORTHO05D005629 5.4e-07 58.5 40 67.5
Lsat_1_v5_gn_5_40881 Lactuca sativa HOM05D004597 ORTHO05D005629 7.1e-07 58.2 41 65.9
CAN.G574.32 Capsicum annuum HOM05D003127 ORTHO05D003709 6.0e-06 55.1 155 29.7
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 6.0e-06 55.1 62 40.3
PRCOL_00007099 Prasinoderma coloniale HOM05D004597 ORTHO05D005629 7.8e-06 54.7 78 37.2


User provided reference genes

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