Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 1.7e-126 456.1 242 100.0
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 1.5e-77 293.5 215 74.9
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 3.8e-73 278.9 211 73.5
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 2.7e-71 272.7 241 64.7
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 6.0e-71 271.6 218 68.8
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 2.5e-69 266.2 214 70.6
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 4.3e-69 265.4 243 63.8
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.8e-68 262.7 243 63.8
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 2.8e-68 262.7 243 63.8
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 6.2e-68 261.5 247 63.6
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 8.1e-68 261.2 247 63.6
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.1e-67 260.8 243 63.8
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.1e-67 260.8 243 63.8
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 2.0e-66 256.5 252 60.7
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 4.5e-66 255.4 232 64.2
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 1.0e-65 254.2 235 63.8
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 2.9e-65 252.7 245 60.8
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 2.9e-65 252.7 244 61.5
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 1.1e-64 250.8 246 61.4
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 1.2e-63 247.3 210 67.6
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 2.1e-63 246.5 246 61.0
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.0e-62 244.2 248 58.5
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 3.0e-62 242.7 211 66.8
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 1.1e-61 240.7 215 65.6
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 2.5e-61 239.6 239 59.8
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 2.1e-60 236.5 238 60.1
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 6.2e-60 235.0 220 64.5
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 6.2e-60 235.0 248 61.3
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 1.1e-59 234.2 250 59.2
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 7.6e-58 228.0 243 58.0
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 2.9e-57 226.1 241 56.0
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 6.5e-57 224.9 242 55.0
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 1.4e-56 223.8 257 55.3
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 1.9e-56 223.4 208 61.1
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 4.2e-56 222.2 224 62.5
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 7.2e-56 221.5 238 58.4
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 1.2e-55 220.7 243 55.6
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 1.6e-55 220.3 252 56.7
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 2.7e-55 219.5 246 56.5
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 6.1e-55 218.4 226 60.6
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.5e-53 213.8 202 63.9
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 9.7e-53 211.1 198 60.6
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 1.6e-52 210.3 244 51.6
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 2.2e-52 209.9 193 60.6
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 2.2e-52 209.9 195 61.0
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 2.2e-52 209.9 195 61.0
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 8.2e-52 208.0 199 60.3
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 1.1e-51 207.6 238 54.6
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 1.4e-51 207.2 241 53.9
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.4e-51 207.2 216 54.6
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 1.4e-51 207.2 249 53.8
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 4.1e-51 205.7 241 53.5
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 5.3e-51 205.3 242 52.9
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 5.3e-51 205.3 247 54.3
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 5.3e-51 205.3 247 51.8
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 1.2e-50 204.1 226 55.3
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 1.5e-50 203.8 216 55.1
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 2.0e-50 203.4 183 65.6
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 3.4e-50 202.6 206 53.4
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 4.5e-50 202.2 239 53.6
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 4.5e-50 202.2 255 50.6
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 5.9e-50 201.8 213 53.5
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 1.7e-49 200.3 242 51.2
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 2.2e-49 199.9 252 50.4
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 2.9e-49 199.5 234 49.1
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 3.8e-49 199.1 199 58.3
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 1.4e-48 197.2 199 55.3
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 1.4e-48 197.2 167 64.7
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 5.5e-48 195.3 256 49.6
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 5.5e-48 195.3 283 48.1
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 7.2e-48 194.9 245 53.5
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 7.2e-48 194.9 206 55.3
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 1.2e-47 194.1 219 57.1
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 3.6e-47 192.6 194 57.2
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 4.6e-47 192.2 233 52.4
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 7.9e-47 191.4 189 54.5
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 1.0e-46 191.0 218 53.2
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 2.3e-46 189.9 220 55.5
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 2.3e-46 189.9 233 51.9
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 3.3e-45 186.0 271 46.9
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 3.3e-45 186.0 252 48.4
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 7.4e-45 184.9 224 50.9
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 2.4e-43 179.9 285 41.4
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 6.9e-43 178.3 234 50.4
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 9.1e-43 177.9 231 52.4
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 1.2e-42 177.6 140 65.7
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 2.6e-42 176.4 135 67.4
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 1.9e-40 170.2 189 52.9
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 2.1e-39 166.8 221 51.6
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 2.1e-39 166.8 223 51.6
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 6.7e-38 161.8 279 43.0
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 1.1e-37 161.0 125 64.8
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 1.7e-36 157.1 235 45.1
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 1.7e-36 157.1 93 94.6
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 2.2e-36 156.8 230 44.3
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 1.4e-35 154.1 238 45.4
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 5.3e-35 152.1 237 44.7
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 2.6e-34 149.8 85 90.6
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 5.9e-34 148.7 189 48.1
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 3.8e-33 146.0 129 61.2
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 5.0e-33 145.6 263 41.1
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 3.2e-32 142.9 162 51.9
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 1.0e-30 137.9 173 49.1
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 2.2e-28 130.2 190 48.9
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 1.0e-25 121.3 145 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 1.7e-25 120.6 173 43.4
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 1.9e-24 117.1 142 47.2
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 2.0e-21 107.1 129 46.5
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 5.7e-21 105.5 202 37.6
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 1.1e-16 91.3 114 54.4
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 1.5e-16 90.9 111 55.0
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 4.2e-16 89.4 150 38.0
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 4.7e-15 85.9 126 46.8
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 5.2e-14 82.4 117 47.9
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 1.5e-13 80.9 49 85.7
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 3.4e-13 79.7 73 64.4
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 2.0e-10 70.5 50 70.0
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 8.6e-09 65.1 97 47.4
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 1.1e-08 64.7 125 36.8
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.1e-07 60.5 50 62.0


User provided reference genes

Program Settings