Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.4e-28 126.7 65 100.0
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.5e-13 77.4 56 73.2
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.9e-13 77.0 54 79.6
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 7.6e-13 76.6 53 77.4
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 7.6e-13 76.6 56 73.2
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.3e-12 75.9 56 75.0
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.3e-12 75.9 54 77.8
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.7e-12 75.5 39 94.9
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.2e-12 75.1 39 92.3
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.2e-12 75.1 39 92.3
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.2e-12 75.1 39 92.3
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.2e-12 75.1 39 92.3
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.9e-12 74.7 39 92.3
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.9e-12 74.7 39 92.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-12 74.3 39 92.3
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.8e-12 74.3 39 92.3
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 5.0e-12 73.9 39 92.3
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 6.5e-12 73.6 41 90.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.5e-12 73.6 55 74.5
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 6.5e-12 73.6 39 92.3
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 8.4e-12 73.2 39 92.3
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 8.4e-12 73.2 39 92.3
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 8.4e-12 73.2 51 80.4
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.4e-12 73.2 51 80.4
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.4e-12 73.2 51 80.4
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.4e-12 73.2 51 80.4
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 8.4e-12 73.2 51 80.4
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-11 72.8 39 89.7
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-11 72.8 39 89.7
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.1e-11 72.8 39 89.7
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.4e-11 72.4 39 92.3
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.9e-11 72.0 39 89.7
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 1.9e-11 72.0 56 71.4
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.9e-11 72.0 39 89.7
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.5e-11 71.6 47 83.0
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 2.5e-11 71.6 62 62.9
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.2e-11 71.2 39 89.7
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 3.2e-11 71.2 39 89.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 4.2e-11 70.9 39 92.3
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.2e-11 70.9 39 92.3
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.2e-11 70.9 39 92.3
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.2e-11 70.9 39 92.3
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 4.2e-11 70.9 39 92.3
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 4.2e-11 70.9 39 92.3
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.5e-11 70.5 39 89.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 5.5e-11 70.5 39 87.2
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 7.2e-11 70.1 39 89.7
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 7.2e-11 70.1 39 89.7
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 7.2e-11 70.1 39 89.7
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 9.3e-11 69.7 39 87.2
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 9.3e-11 69.7 39 87.2
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 9.3e-11 69.7 39 89.7
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 9.3e-11 69.7 53 73.6
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 9.3e-11 69.7 39 89.7
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.2e-10 69.3 39 87.2
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.2e-10 69.3 39 87.2
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-10 69.3 61 65.6
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.6e-10 68.9 57 66.7
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 2.1e-10 68.6 39 84.6
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.7e-10 68.2 39 87.2
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.7e-10 68.2 39 87.2
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.7e-10 68.2 39 87.2
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 2.7e-10 68.2 39 87.2
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 3.5e-10 67.8 53 69.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 3.5e-10 67.8 39 89.7
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 3.5e-10 67.8 47 76.6
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 4.6e-10 67.4 38 89.5
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 4.6e-10 67.4 38 89.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 4.6e-10 67.4 39 87.2
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 4.6e-10 67.4 39 87.2
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 4.6e-10 67.4 39 87.2
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 6.1e-10 67.0 39 82.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.1e-10 67.0 39 82.1
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 6.1e-10 67.0 41 80.5
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 7.9e-10 66.6 39 79.5
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 7.9e-10 66.6 39 79.5
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 7.9e-10 66.6 52 73.1
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 7.9e-10 66.6 52 73.1
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.0e-09 66.2 47 74.5
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.8e-09 65.5 39 82.1
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.8e-09 65.5 39 82.1
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.8e-09 65.5 39 82.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 3.9e-09 64.3 39 79.5
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 5.1e-09 63.9 39 82.1
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 6.7e-09 63.5 39 79.5
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 6.7e-09 63.5 39 82.1
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 8.7e-09 63.2 46 71.7
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 8.7e-09 63.2 51 68.6
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.1e-08 62.8 34 88.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.5e-08 62.4 39 79.5
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.5e-08 62.4 39 79.5
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.9e-08 62.0 39 79.5
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 2.5e-08 61.6 34 85.3
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 3.3e-08 61.2 39 76.9
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 5.7e-08 60.5 39 71.8
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.7e-08 60.5 38 76.3
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 7.4e-08 60.1 39 76.9
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 7.4e-08 60.1 39 76.9
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 7.4e-08 60.1 39 76.9
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 7.4e-08 60.1 39 76.9
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 9.7e-08 59.7 51 66.7
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 1.6e-07 58.9 34 82.4
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.8e-07 58.2 39 69.2
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.8e-07 58.2 46 63.0
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 1.4e-06 55.8 39 71.8
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.4e-06 55.8 49 63.3
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.4e-06 55.1 38 73.7
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.1e-06 54.7 58 55.2


User provided reference genes

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