Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.8e-176 622.5 318 100.0
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.0e-139 500.4 319 83.4
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 7.5e-130 467.6 314 79.0
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.4e-123 446.8 319 75.2
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 5.6e-93 345.1 314 63.1
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 8.7e-78 294.7 328 55.8
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 3.3e-77 292.7 327 54.1
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 5.3e-75 285.4 328 53.7
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 3.4e-74 282.7 338 53.3
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.9e-72 276.9 325 53.8
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.9e-72 276.9 335 53.4
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 7.9e-71 271.6 322 53.1
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 2.8e-68 263.1 342 51.5
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 3.4e-66 256.1 319 50.8
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 7.7e-66 255.0 330 52.7
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 7.2e-64 248.4 335 50.4
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.6e-63 247.3 354 46.9
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.7e-63 245.7 340 49.1
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 7.9e-63 245.0 333 49.8
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 6.7e-62 241.9 317 52.4
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.1e-61 241.1 328 48.8
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.3e-61 239.6 333 49.5
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.1e-59 234.6 324 50.6
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.4e-59 234.2 329 50.5
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.0e-58 230.3 324 50.0
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.5e-58 229.6 324 50.0
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.7e-57 227.3 339 46.9
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 6.5e-57 225.3 338 47.9
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.5e-57 224.9 335 48.7
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 8.5e-57 224.9 210 62.9
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 8.5e-57 224.9 210 62.9
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.5e-56 223.4 326 44.5
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 3.2e-56 223.0 342 48.5
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-55 221.1 210 62.4
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-55 221.1 210 62.4
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.2e-55 221.1 330 46.7
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 2.7e-55 219.9 210 61.9
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 2.7e-55 219.9 210 61.9
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.6e-55 219.5 321 45.8
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-55 219.5 210 62.4
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.8e-54 217.2 321 45.2
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.8e-54 214.9 333 48.0
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 9.7e-53 211.5 328 44.8
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.2e-52 210.3 336 44.0
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.7e-52 209.5 339 46.9
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 4.8e-52 209.1 339 46.9
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 4.8e-52 209.1 339 46.9
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 4.1e-51 206.1 335 45.1
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 5.3e-51 205.7 336 44.6
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.2e-50 204.5 325 47.4
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.6e-50 204.1 341 45.5
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 7.7e-50 201.8 322 42.5
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.7e-49 200.7 356 45.2
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 2.2e-49 200.3 322 47.8
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.9e-49 199.9 311 47.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 6.5e-49 198.7 334 42.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 9.4e-48 194.9 317 43.2
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 4.7e-47 192.6 187 62.0
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 6.1e-47 192.2 322 45.3
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 6.1e-47 192.2 187 62.0
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 6.7e-46 188.7 248 52.0
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 4.4e-45 186.0 334 41.9
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 5.7e-45 185.7 345 44.1
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 9.7e-45 184.9 187 61.0
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.3e-44 184.5 321 43.9
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 3.7e-44 183.0 336 41.4
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 3.1e-43 179.9 329 42.9
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.1e-43 179.5 318 43.4
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 7.0e-43 178.7 326 42.3
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 7.0e-43 178.7 320 43.4
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.0e-42 177.2 317 43.8
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 3.5e-42 176.4 306 44.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 5.9e-42 175.6 344 38.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 3.2e-40 169.9 325 42.8
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.2e-40 168.7 170 60.0
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 9.4e-40 168.3 361 38.2
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.6e-39 167.5 326 41.7
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 2.1e-39 167.2 341 39.3
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.0e-38 164.9 320 40.6
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.4e-38 164.5 341 39.9
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.3e-38 163.7 191 51.3
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 2.3e-38 163.7 338 40.5
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.3e-38 163.7 369 39.6
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 2.0e-37 160.6 324 40.7
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.6e-37 160.2 329 40.4
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.4e-37 159.5 345 37.7
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 9.8e-37 158.3 338 39.9
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 9.8e-37 158.3 328 39.9
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.3e-36 155.6 319 42.0
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 5.4e-35 152.5 323 39.3
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.0e-34 150.6 343 37.9
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.7e-34 150.2 343 37.9
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.5e-34 149.8 351 37.0
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 5.9e-34 149.1 326 39.6
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 3.8e-33 146.4 342 37.4
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 6.6e-33 145.6 328 39.9
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 8.6e-33 145.2 330 40.0
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.1e-32 144.8 347 37.2
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.1e-32 144.8 320 39.7
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 2.5e-32 143.7 345 35.7
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 7.2e-32 142.1 315 38.4
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.7e-31 139.4 319 40.8
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.3e-30 137.1 331 37.5
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 3.0e-30 136.7 309 38.5
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 5.2e-30 136.0 326 37.4
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 6.8e-30 135.6 318 37.4
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 8.9e-30 135.2 250 43.6
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.2e-29 134.8 341 37.0
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.5e-29 134.4 343 36.4
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.5e-29 134.4 317 38.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.5e-29 134.4 318 37.7
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 3.4e-29 133.3 334 35.9
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 3.4e-29 133.3 314 35.0
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.4e-29 132.9 317 38.8
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 8.3e-28 128.6 76 88.2
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.1e-27 128.3 309 38.2
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.4e-27 127.9 336 36.0
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.4e-27 127.9 336 36.0
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.8e-27 127.5 336 36.0
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 5.4e-27 125.9 310 36.1
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 9.2e-27 125.2 323 37.5
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.5e-26 123.2 316 38.6
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 4.5e-26 122.9 297 36.7
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.0e-25 121.7 215 41.9
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.0e-25 121.7 318 34.9
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.3e-25 120.6 318 36.2
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 2.9e-25 120.2 342 36.3
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 8.6e-25 118.6 338 35.5
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.5e-24 117.1 322 34.5
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 9.5e-24 115.2 384 33.3
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 2.1e-23 114.0 336 33.9
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 6.1e-23 112.5 135 51.9
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 1.4e-22 111.3 306 37.3
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 4.4e-21 106.3 427 30.4
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 9.8e-21 105.1 319 32.6
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.7e-20 104.4 315 32.1
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 3.7e-20 103.2 309 36.9
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 5.4e-19 99.4 186 40.9
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.0e-18 95.9 240 37.1
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.3e-17 94.7 268 33.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.0e-17 93.6 71 70.4
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.5e-16 90.5 322 33.2
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 9.5e-16 88.6 303 30.0
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.8e-15 87.0 139 40.3
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 6.2e-15 85.9 301 31.9
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 8.0e-15 85.5 218 34.9
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 2.3e-14 84.0 345 31.0
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 3.1e-14 83.6 277 33.6
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.2e-13 81.6 335 31.6
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.5e-13 81.3 333 31.2
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 4.9e-12 76.3 286 29.7
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 3.3e-08 63.5 95 46.3
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 4.3e-08 63.2 177 33.9
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 4.3e-08 63.2 229 32.3
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 7.3e-08 62.4 132 39.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 9.5e-08 62.0 129 35.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.6e-07 60.1 270 26.7
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.1e-06 58.5 167 34.7
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 1.4e-06 58.2 264 27.3
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 3.1e-06 57.0 80 46.2
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 4.0e-06 56.6 230 30.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 5.2e-06 56.2 90 41.1
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.8e-06 55.8 70 50.0
HPP92_025086 Vanilla planifolia HOM05D004499 ORTHO05D004928 8.9e-06 55.5 243 31.3


User provided reference genes

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