Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 2.2e-45 185.3 93 100.0
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.8e-35 150.2 78 97.4
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.2e-32 140.6 77 93.5
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 6.2e-32 140.6 81 88.9
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.4e-31 139.4 77 90.9
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.1e-31 138.3 77 90.9
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 2.6e-30 135.2 77 89.6
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 2.9e-29 131.7 77 85.7
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.4e-28 127.5 77 84.4
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 9.2e-28 126.7 77 83.1
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.6e-27 125.9 77 83.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 2.1e-27 125.6 78 80.8
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.7e-27 125.2 78 80.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.7e-27 125.2 77 80.5
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 6.0e-27 124.0 77 83.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.0e-26 123.2 77 79.2
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.3e-26 122.9 78 76.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.1e-26 120.9 77 77.9
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 8.6e-26 120.2 77 77.9
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.1e-25 119.8 77 77.9
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.5e-25 119.4 77 79.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.5e-25 119.4 77 77.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.9e-25 119.0 81 77.8
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 2.5e-25 118.6 76 80.3
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 2.5e-25 118.6 76 80.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 4.3e-25 117.9 77 76.6
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 4.3e-25 117.9 77 77.9
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.3e-25 117.9 83 72.3
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 4.3e-25 117.9 77 76.6
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 5.6e-25 117.5 83 71.1
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 7.3e-25 117.1 77 75.3
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 9.5e-25 116.7 77 74.0
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 9.5e-25 116.7 77 75.3
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.2e-24 116.3 77 75.3
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.2e-24 116.3 77 74.0
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.6e-24 115.9 77 74.0
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.1e-24 115.5 77 76.6
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.8e-24 115.2 77 76.6
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.6e-24 114.8 77 74.0
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 6.2e-24 114.0 77 74.0
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.1e-23 113.2 77 72.7
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.3e-23 112.1 77 71.4
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.3e-23 112.1 77 74.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.3e-23 112.1 77 74.0
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 3.1e-23 111.7 77 75.3
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 5.2e-23 110.9 76 73.7
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 8.9e-23 110.2 77 71.4
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.5e-22 109.4 77 74.0
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.6e-22 108.6 77 75.3
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.6e-22 108.6 77 75.3
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 2.6e-22 108.6 77 67.5
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.4e-22 108.2 77 68.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 3.4e-22 108.2 76 75.0
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 9.9e-22 106.7 83 66.3
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.3e-21 106.3 77 71.4
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.3e-21 106.3 77 68.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.3e-21 106.3 77 68.8
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.3e-21 106.3 77 70.1
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.9e-21 105.1 77 67.5
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 2.9e-21 105.1 77 67.5
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 4.9e-21 104.4 83 65.1
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.9e-21 104.4 83 66.3
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.9e-21 104.4 83 66.3
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.4e-20 102.8 76 73.7
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.4e-20 102.8 76 69.7
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.4e-20 102.8 77 71.4
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.9e-20 102.4 77 64.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 5.4e-20 100.9 77 71.4
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 9.2e-20 100.1 77 62.3
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.6e-19 99.4 77 66.2
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 2.1e-19 99.0 77 68.8
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.1e-19 99.0 77 64.9
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 2.7e-19 98.6 77 63.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.7e-19 98.6 78 65.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.5e-19 98.2 78 65.4
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.5e-19 98.2 77 66.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.0e-19 97.4 83 62.7
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 6.0e-19 97.4 83 62.7
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 6.0e-19 97.4 77 68.8
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 6.0e-19 97.4 78 64.1
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.8e-19 97.1 77 62.3
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 7.8e-19 97.1 76 65.8
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.0e-18 96.7 77 66.2
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.0e-18 96.7 77 63.6
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.0e-18 96.7 77 64.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.0e-18 96.7 76 69.7
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.3e-18 96.3 77 66.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.7e-18 95.9 77 66.2
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.7e-18 95.9 79 60.8
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.7e-18 95.9 77 66.2
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 2.3e-18 95.5 77 67.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 3.0e-18 95.1 77 64.9
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 3.0e-18 95.1 76 68.4
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.9e-18 94.7 77 64.9
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 5.1e-18 94.4 77 64.9
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 5.1e-18 94.4 77 64.9
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 5.1e-18 94.4 59 79.7
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.6e-18 93.6 77 63.6
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.5e-17 92.8 77 63.6
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.5e-17 92.8 76 61.8
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.9e-17 92.4 77 62.3
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.9e-17 92.4 50 94.0
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.9e-17 92.4 50 94.0
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.9e-17 92.4 50 94.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.9e-17 92.4 50 94.0
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.9e-17 92.4 78 61.5
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 3.3e-17 91.7 77 66.2
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 3.3e-17 91.7 49 91.8
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 3.3e-17 91.7 59 78.0
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 4.3e-17 91.3 56 78.6
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 5.6e-17 90.9 77 66.2
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 5.6e-17 90.9 50 88.0
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 7.3e-17 90.5 78 62.8
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.2e-16 89.7 76 60.5
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-16 89.4 77 63.6
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-16 89.4 77 63.6
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.6e-16 89.4 77 61.0
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.1e-15 86.7 77 61.0
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.4e-15 86.3 77 58.4
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 4.0e-15 84.7 77 62.3
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 5.2e-15 84.3 77 58.4
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 5.2e-15 84.3 52 82.7
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 8.9e-15 83.6 53 79.2
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.5e-14 82.8 76 56.6
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.0e-14 82.4 77 59.7
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.0e-14 82.4 77 59.7
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.0e-14 82.4 77 59.7
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 2.6e-14 82.0 77 55.8
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 7.6e-14 80.5 54 75.9
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 7.6e-14 80.5 60 68.3
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.3e-13 79.7 53 75.5
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 6.4e-13 77.4 52 73.1
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 6.4e-13 77.4 52 73.1
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 6.4e-13 77.4 52 73.1
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 6.4e-13 77.4 49 77.6
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.4e-12 76.3 77 54.5
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.4e-12 75.5 51 72.5
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 4.2e-12 74.7 77 54.5
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 4.2e-12 74.7 77 54.5
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 4.2e-12 74.7 77 54.5
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 4.6e-11 71.2 49 69.4
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.3e-10 69.7 49 67.3
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 5.1e-10 67.8 76 52.6
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.4e-07 58.9 73 43.8
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 2.0e-06 55.8 43 62.8
CsaV3_6G021420 Cucumis sativus L. HOM05D003640 ORTHO05D034990 5.8e-06 54.3 52 61.5


User provided reference genes

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