Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.5e-138 494.6 247 100.0
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 9.8e-93 344.0 195 86.7
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.3e-92 340.9 196 88.8
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 9.1e-91 337.4 196 88.3
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-82 310.1 233 70.4
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-82 310.1 233 70.4
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-82 310.1 233 70.4
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-82 310.1 233 70.4
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-71 273.9 156 82.7
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-68 263.8 236 63.1
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 6.6e-49 198.4 156 59.0
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.6e-47 193.7 164 57.3
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 4.7e-47 192.2 156 57.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 4.7e-47 192.2 161 58.4
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.7e-47 192.2 193 51.8
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 6.2e-47 191.8 156 58.3
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 8.1e-47 191.4 156 57.7
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 8.1e-47 191.4 156 57.7
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 8.1e-47 191.4 156 57.7
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 8.1e-47 191.4 193 51.8
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.4e-46 190.7 181 51.9
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-46 190.3 148 70.3
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.4e-46 189.9 171 52.0
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.4e-46 189.9 160 55.6
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 3.1e-46 189.5 197 48.2
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 4.0e-46 189.1 156 57.1
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 5.2e-46 188.7 152 59.9
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 5.2e-46 188.7 164 54.3
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 6.8e-46 188.3 160 54.4
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 8.9e-46 188.0 156 57.1
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 8.9e-46 188.0 172 53.5
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.6e-45 186.4 160 56.2
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 4.4e-45 185.7 155 55.5
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 4.4e-45 185.7 155 55.5
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 5.8e-45 185.3 152 56.6
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 7.6e-45 184.9 249 44.6
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 9.9e-45 184.5 154 58.4
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.3e-44 184.1 158 55.7
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.7e-44 183.7 198 47.5
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.7e-44 183.7 160 55.6
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 2.2e-44 183.3 156 54.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 6.4e-44 181.8 161 55.9
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 6.4e-44 181.8 152 57.2
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 8.4e-44 181.4 234 44.4
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 8.4e-44 181.4 152 57.2
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 8.4e-44 181.4 162 54.3
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.1e-43 181.0 261 40.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-43 181.0 152 57.2
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.1e-43 181.0 154 57.8
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.4e-43 180.6 161 51.6
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.4e-43 180.6 155 56.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.4e-43 180.6 155 56.1
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 2.4e-43 179.9 155 57.4
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 3.2e-43 179.5 165 54.5
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.2e-43 179.5 165 54.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.2e-43 179.5 165 54.5
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 9.3e-43 177.9 236 43.2
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.1e-42 176.8 246 43.1
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 6.0e-42 175.3 156 51.9
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 6.0e-42 175.3 153 53.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 7.8e-42 174.9 216 47.2
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 7.8e-42 174.9 154 55.2
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.0e-41 174.5 252 41.3
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.0e-41 174.5 252 41.3
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.3e-41 174.1 153 53.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 2.3e-41 173.3 240 42.1
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.9e-41 172.6 157 54.1
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 8.7e-41 171.4 179 48.6
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.9e-40 170.2 148 51.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 4.3e-40 169.1 182 47.3
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 4.3e-40 169.1 152 53.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 4.3e-40 169.1 152 53.9
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.6e-39 167.2 235 40.9
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 2.8e-39 166.4 159 52.8
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 4.8e-39 165.6 148 50.0
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 6.2e-39 165.2 182 47.3
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 6.2e-39 165.2 154 53.9
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 8.1e-39 164.9 153 52.9
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.1e-38 164.5 149 53.0
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.1e-38 164.5 153 54.9
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.1e-38 164.5 152 52.6
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.4e-38 164.1 156 53.2
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-38 163.7 145 55.2
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.4e-38 163.3 151 51.7
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.4e-38 163.3 151 51.7
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 3.1e-38 162.9 240 40.4
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 4.0e-38 162.5 145 54.5
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 6.9e-38 161.8 152 51.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.0e-38 161.4 148 54.7
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 3.4e-37 159.5 152 54.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 4.4e-37 159.1 160 48.8
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.3e-36 157.5 239 40.6
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.2e-36 156.8 183 45.4
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 3.8e-36 156.0 225 41.8
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 4.9e-36 155.6 229 40.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 4.2e-35 152.5 240 38.8
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.1e-35 151.8 141 56.0
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.0e-33 147.9 158 49.4
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.3e-33 147.5 151 47.7
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.3e-33 147.5 148 49.3
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 5.1e-33 145.6 183 44.8
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 6.6e-33 145.2 137 53.3
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 6.6e-33 145.2 137 53.3
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.3e-31 141.0 151 46.4
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 2.1e-31 140.2 215 40.0
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 4.8e-31 139.0 176 39.8
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 8.1e-31 138.3 136 47.8
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 2.4e-30 136.7 152 46.7
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 3.1e-30 136.3 159 45.9
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.5e-29 134.0 189 41.8
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.7e-28 130.6 123 52.0
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 4.9e-28 129.0 89 70.8
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 6.4e-28 128.6 218 39.4
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.1e-27 127.9 157 43.9
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.9e-27 127.1 135 43.7
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 4.2e-27 125.9 160 41.2
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 4.2e-27 125.9 208 38.9
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.0e-25 121.3 126 47.6
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 2.5e-24 116.7 133 39.8
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 7.4e-24 115.2 154 44.8
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.4e-22 110.9 99 52.5
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.3e-22 109.0 99 50.5
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 2.0e-21 107.1 99 52.5
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.3e-20 104.4 98 52.0
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 9.3e-19 98.2 134 40.3
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 6.7e-17 92.0 120 40.8
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 3.3e-16 89.7 98 45.9
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 4.3e-16 89.4 133 36.8
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 7.4e-16 88.6 103 44.7
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.1e-15 87.0 98 44.9
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.8e-15 85.9 58 65.5
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.4e-14 84.3 46 73.9
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 3.1e-14 83.2 62 61.3
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.2e-13 81.3 85 48.2
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 5.9e-13 79.0 45 73.3
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.2e-12 77.0 53 67.9
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.2e-12 77.0 45 71.1
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 6.5e-12 75.5 56 60.7
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.5e-11 73.6 102 36.3
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 2.7e-10 70.1 55 58.2
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 4.6e-10 69.3 83 48.2
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 7.9e-10 68.6 121 34.7
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 7.9e-10 68.6 55 56.4
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.0e-09 68.2 129 33.3
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 2.5e-08 63.5 93 37.6
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 4.3e-08 62.8 49 55.1
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 7.4e-08 62.0 32 75.0
HPP92_015994 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.4e-06 57.8 61 47.5
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 9.0e-06 55.1 34 64.7


User provided reference genes

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