Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G005200 Populus trichocarpa HOM05D006534 ORTHO05D006434 2.2e-19 98.6 77 100.0
Ciclev10026875m.g Citrus clementina HOM05D006534 ORTHO05D006434 2.8e-14 81.6 79 70.9
GSVIVG01002630001 Vitis vinifera HOM05D006534 ORTHO05D006434 3.4e-12 74.7 80 83.8
Glyma.17G160200 Glycine max HOM05D006534 ORTHO05D006434 1.7e-11 72.4 81 72.8
Manes.13G110700 Manihot esculenta HOM05D006534 ORTHO05D006434 2.9e-11 71.6 81 86.4
arahy.Tifrunner.gnm1.ann1.VT3BTZ Arachis hypogaea HOM05D006534 ORTHO05D006434 5.0e-11 70.9 88 76.1
Lalb_Chr16g0389271 Lupinus albus HOM05D006534 ORTHO05D006434 1.1e-10 69.7 81 72.8
Phvul.003G234300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 1.4e-10 69.3 88 75.0
Cfa004139 Carpinus fangiana HOM05D006534 ORTHO05D006434 1.9e-10 68.9 79 67.1
Ca_02937_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 3.2e-10 68.2 91 72.5
Ca_22100_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 3.2e-10 68.2 85 65.9
Manes.12G115500 Manihot esculenta HOM05D006534 ORTHO05D006434 3.2e-10 68.2 78 79.5
Sc08g0004430 Simmondsia chinensis HOM05D006534 ORTHO05D006434 3.2e-10 68.2 91 65.9
THA.LOC104821207 Tarenaya hassleriana HOM05D006534 ORTHO05D006434 9.4e-10 66.6 79 81.0
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 4.6e-09 64.3 99 61.6
CANSAT01G0131 Cannabis sativa HOM05D006534 ORTHO05D006434 6.1e-09 63.9 92 71.7
GSVIVG01037814001 Vitis vinifera HOM05D006534 ORTHO05D006434 1.8e-08 62.4 89 73.0
Psat4g081440 Pisum sativum HOM05D006534 ORTHO05D006434 5.1e-08 60.8 86 68.6
HPP92_006071 Vanilla planifolia HOM05D006534 ORTHO05D006434 5.1e-08 60.8 87 71.3
Duzib052G0836 Durio zibethinus HOM05D006534 ORTHO05D006434 6.7e-08 60.5 77 63.6
TPR.G24213 Trifolium pratense HOM05D006534 ORTHO05D006434 8.8e-08 60.1 91 67.0
TWI14G1419 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 1.1e-07 59.7 90 65.6
Phvul.007G046300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 1.5e-07 59.3 95 69.5
CDE04G3098 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 2.0e-07 58.9 86 75.6
Glyma.11G002000 Glycine max HOM05D006534 ORTHO05D006434 2.6e-07 58.5 104 56.7
CsaV3_4G000160 Cucumis sativus L. HOM05D006534 ORTHO05D006434 4.4e-07 57.8 92 62.0
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 4.4e-07 57.8 97 59.8
Thecc.02G118300 Theobroma cacao HOM05D006534 ORTHO05D006434 4.4e-07 57.8 89 68.5
Aqoxy5G01709 Aquilegia oxysepala HOM05D006534 ORTHO05D006434 7.4e-07 57.0 95 54.7
Gorai.008G020000 Gossypium raimondii HOM05D006534 ORTHO05D006434 7.4e-07 57.0 90 71.1
Sp2g29050 Schrenkiella parvula HOM05D006534 ORTHO05D006434 7.4e-07 57.0 29 82.8
CDE06G1753 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 9.7e-07 56.6 96 68.8
HanXRQChr16g0509341 Helianthus annuus HOM05D006534 ORTHO05D006434 1.7e-06 55.8 91 71.4
Aa31LG1G16150 Aethionema arabicum HOM05D006534 ORTHO05D006434 2.2e-06 55.5 29 79.3
Lj5g0022695 Lotus japonicus HOM05D006534 ORTHO05D006434 2.2e-06 55.5 97 61.9
Phvul.003G234200 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 2.2e-06 55.5 88 70.5
Ciclev10029655m.g Citrus clementina HOM05D006534 ORTHO05D006434 2.8e-06 55.1 100 60.0
RcHm_v2.0_Chr2g0108271 Rosa chinensis HOM05D006534 ORTHO05D006434 2.8e-06 55.1 93 68.8
Sed0015576 Sechium edule HOM05D006534 ORTHO05D006434 4.8e-06 54.3 98 56.1
Actinidia36378 Actinidia chinensis HOM05D007867 ORTHO05D009953 6.3e-06 53.9 29 75.9
BcaNung05864 Brassica carinata HOM05D001027 ORTHO05D000844 6.3e-06 53.9 29 79.3
C03p59650 Brassica napus HOM05D006534 ORTHO05D006434 6.3e-06 53.9 29 79.3
BolC3t18227H Brassica oleracea HOM05D006534 ORTHO05D006434 6.3e-06 53.9 29 79.3
BraA06t26214Z Brassica rapa HOM05D006534 ORTHO05D006434 6.3e-06 53.9 29 79.3
CARHR279990 Cardamine hirsuta HOM05D006534 ORTHO05D006434 6.3e-06 53.9 29 79.3
Oeu013796.1 Olea europaea HOM05D006534 ORTHO05D006434 6.3e-06 53.9 92 64.1
AL8G43700 Arabidopsis lyrata HOM05D006534 ORTHO05D006434 8.2e-06 53.5 77 70.1
Glyma.01G242200 Glycine max HOM05D006534 ORTHO05D006434 8.2e-06 53.5 107 60.7


User provided reference genes

Program Settings