Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1901.3 1012 100.0
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1767.3 1049 90.8
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1721.4 1015 90.7
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1715.3 1023 90.1
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1696.0 1012 88.6
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1528.5 1030 80.5
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1468.8 1019 75.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1454.9 1019 74.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1441.0 1020 74.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1431.0 1021 73.3
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1426.4 1017 73.5
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1426.0 1014 73.4
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1426.0 1023 72.4
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1422.1 1013 72.8
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1420.6 1013 72.7
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1417.1 1024 72.6
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1416.7 1023 72.2
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1413.3 1023 72.8
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1411.7 1013 72.5
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1407.9 1051 71.6
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1406.7 1023 72.5
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1402.9 1021 71.9
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1397.1 1023 72.7
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1389.4 1015 71.6
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1387.9 1016 72.3
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1379.0 1026 72.1
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1378.6 1023 71.3
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1375.9 1025 71.7
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1374.0 1013 70.7
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1370.5 1015 71.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1370.1 1016 71.0
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1369.4 1016 70.9
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1367.1 1025 70.3
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1365.1 1025 70.2
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1364.4 1019 70.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1363.6 1015 70.5
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1353.2 1015 71.1
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1352.8 1019 69.9
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1352.8 1020 70.2
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1352.0 1013 70.1
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1352.0 1020 70.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1348.6 1001 70.6
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1344.7 969 71.9
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1344.7 1013 70.6
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1340.9 1013 68.6
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1339.3 1033 68.0
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1336.6 1057 68.0
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1329.7 1021 68.5
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1328.5 1031 68.5
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1328.5 1020 68.6
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1328.5 1013 69.9
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1322.4 1025 67.5
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1322.0 1026 67.7
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1321.6 1023 67.9
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1320.8 1010 68.3
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1320.1 1024 67.1
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1319.7 1001 68.3
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1319.7 1027 67.5
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1318.5 1001 68.2
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1317.8 1025 67.5
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1317.8 1013 68.0
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1317.0 1017 68.1
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1314.7 1024 67.8
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1313.1 1027 66.9
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1312.0 1001 68.3
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1309.7 1027 66.8
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1305.8 1082 64.7
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1303.5 1034 67.5
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1303.1 1014 67.4
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1301.6 1021 67.8
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1300.8 942 71.0
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1300.4 1013 67.5
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1299.3 1022 67.0
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 1019 68.0
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1291.9 1022 66.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1291.9 986 68.2
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1289.6 1017 67.1
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1286.6 1019 68.5
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1285.4 1048 65.3
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1285.0 1025 67.1
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1283.1 1007 65.6
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1281.5 1043 65.6
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1275.0 1009 66.4
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1005 67.0
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1265.8 1056 64.4
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1265.8 948 69.0
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1265.0 1013 66.3
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1263.8 1032 65.5
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1261.1 1005 66.6
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1258.8 1007 65.1
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1252.3 954 67.4
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1241.9 953 67.3
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1236.1 1012 65.6
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1235.3 1039 64.0
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1229.2 891 72.7
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1228.4 1013 64.9
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1212.6 1027 63.8
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1212.6 1007 63.7
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1198.3 796 77.4
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1184.5 1023 61.3
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1166.8 793 76.2
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1164.8 859 69.4
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1149.0 1072 59.0
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1135.2 790 74.2
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1108.2 959 59.9
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1103.2 1024 58.4
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.3e-296 1021.5 999 52.8
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 8.1e-295 1017.3 709 73.9
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 9.0e-294 1013.8 1015 53.8
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 3.8e-292 1008.4 958 54.1
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 6.9e-286 987.6 1016 52.8
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.2e-282 976.9 836 61.8
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 5.1e-273 944.9 968 51.9
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 3.6e-266 922.2 970 59.8
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.1e-262 910.6 749 67.0
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.1e-254 884.0 652 70.9
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 7.0e-238 828.2 987 47.5
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.5e-219 766.5 625 65.3
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 9.2e-214 748.0 630 64.4
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 3.5e-213 746.1 564 66.3
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.1e-206 724.5 701 53.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.6e-200 703.4 629 60.7
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.5e-192 677.6 536 66.2
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 6.0e-189 665.6 597 57.1
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 4.9e-183 646.0 1020 43.7
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-172 610.1 583 62.1
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 8.7e-172 608.6 572 56.5
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 2.1e-157 560.8 619 49.8
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.6e-149 533.5 324 86.1
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 7.4e-147 525.8 1055 33.5
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 5.1e-140 503.1 957 31.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.6e-128 464.2 388 60.8
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-119 435.6 265 84.9
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.6e-115 421.0 383 61.1
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.4e-113 415.2 1017 30.3
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.0e-108 399.1 291 70.8
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 9.8e-107 392.5 288 71.5
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.3e-106 392.1 365 58.1
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-102 378.6 251 81.3
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 5.8e-99 366.7 572 41.6
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.2e-96 359.0 563 40.9
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.5e-96 357.5 412 45.4
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.3e-95 355.5 558 43.2
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.3e-95 354.8 306 62.1
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 3.9e-95 354.0 289 63.7
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 2.5e-94 351.3 277 67.1
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 7.6e-83 313.2 228 69.3
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.1e-81 309.3 299 59.2
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.3e-79 302.4 252 61.1
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.5e-75 288.9 244 60.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.3e-71 275.8 189 74.1
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.6e-69 267.7 430 42.8
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.4e-67 260.8 242 61.6
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.4e-65 255.8 219 56.2
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.9e-65 255.4 592 32.8
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 3.3e-62 244.6 305 48.5
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 6.2e-61 240.4 431 41.3
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 5.8e-59 233.8 419 41.1
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.0e-55 221.5 225 54.7
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.6e-53 215.7 154 74.7
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 3.2e-49 201.4 134 74.6
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.1e-48 198.7 163 65.0
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 1.5e-43 182.6 181 52.5
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 5.7e-38 164.1 338 36.7
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.6e-37 162.5 124 67.7
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.8e-36 159.1 238 43.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.4e-36 158.7 102 76.5
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 4.1e-36 157.9 92 82.6
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 2.0e-35 155.6 413 33.2
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.1e-33 149.8 139 59.7
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.0e-30 139.0 174 51.1
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 8.2e-29 133.7 122 58.2
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.5e-25 120.9 74 75.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.5e-25 120.9 74 75.7
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.1e-24 119.0 163 44.2
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 7.9e-24 117.1 172 43.6
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 5.1e-23 114.4 173 42.2
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 9.7e-22 110.2 72 77.8
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.3e-21 109.8 78 69.2
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.1e-20 104.8 109 49.5
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 1.2e-08 66.6 53 62.3
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 3.0e-07 62.0 163 32.5
SEGI_22189 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 5.7e-06 57.8 65 44.6
Actinidia23183 Actinidia chinensis HOM05D003801 ORTHO05D057972 7.5e-06 57.4 54 53.7


User provided reference genes

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