Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 0.0e+00 1251.5 700 100.0
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 6.2e-310 1067.0 701 85.4
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 7.4e-255 884.0 701 76.0
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.7e-129 467.6 726 50.4
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 4.8e-129 466.1 639 52.0
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.4e-128 464.5 742 48.5
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.2e-127 461.5 747 47.9
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 8.5e-126 455.3 743 48.5
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 6.7e-123 445.7 733 45.2
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 2.0e-122 444.1 728 49.2
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.3e-122 443.4 768 47.3
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.7e-121 441.0 751 47.4
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 2.0e-119 434.1 696 50.0
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.1e-117 428.3 442 53.4
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.6e-116 424.5 784 44.3
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 4.4e-114 416.4 747 44.4
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.8e-113 413.7 729 47.3
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 3.6e-108 396.7 824 39.7
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 6.1e-108 396.0 771 45.4
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 6.1e-108 396.0 771 45.4
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 8.0e-108 395.6 795 43.0
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.0e-106 391.0 499 50.1
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 9.8e-106 388.7 498 50.2
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 3.1e-104 383.6 494 46.8
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 1.6e-103 381.3 754 44.2
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.1e-101 375.2 736 42.4
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.3e-101 373.6 766 41.8
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 5.6e-101 372.9 493 48.7
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.0e-99 368.6 761 43.6
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 5.7e-98 362.8 733 40.2
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 7.5e-98 362.5 771 42.2
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 6.4e-97 359.4 795 41.3
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 5.4e-96 356.3 740 38.8
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.2e-95 355.1 773 43.2
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 3.5e-95 353.6 474 46.4
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.9e-94 350.1 790 41.6
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 5.0e-94 349.7 424 47.9
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 3.3e-93 347.1 463 46.2
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 9.5e-93 345.5 776 42.5
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 3.6e-92 343.6 843 39.9
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 4.7e-92 343.2 830 42.0
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 6.2e-92 342.8 434 47.9
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 8.0e-92 342.4 424 48.6
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.4e-91 341.7 465 46.2
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.8e-91 341.3 482 45.6
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.1e-91 340.5 789 41.1
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 3.1e-91 340.5 510 43.7
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 5.2e-91 339.7 738 42.8
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 5.2e-91 339.7 502 45.4
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 8.9e-91 339.0 794 39.3
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.8e-90 336.3 798 39.8
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 8.3e-89 332.4 732 38.7
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.7e-86 324.7 672 44.9
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 8.9e-83 312.4 763 41.9
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 1.2e-82 312.0 417 48.0
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 5.8e-82 309.7 397 49.4
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 3.7e-81 307.0 460 44.6
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 1.1e-80 305.4 764 38.4
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.2e-80 303.9 421 45.1
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 5.4e-80 303.1 428 46.5
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 7.1e-80 302.8 439 46.2
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 9.2e-80 302.4 428 46.5
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.5e-79 300.4 523 39.2
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 8.6e-78 295.8 503 41.2
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 3.3e-77 293.9 474 42.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 5.6e-77 293.1 427 45.2
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 7.3e-77 292.7 441 46.7
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 9.5e-77 292.4 364 47.8
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 2.1e-76 291.2 748 39.8
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.7e-76 290.0 778 37.8
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 8.1e-76 289.3 438 44.7
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 4.0e-75 287.0 420 50.2
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 6.8e-75 286.2 399 45.4
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.0e-74 284.6 425 47.5
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 2.6e-74 284.3 461 43.2
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 5.8e-74 283.1 522 42.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.7e-73 281.6 483 41.4
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.7e-73 281.6 724 37.4
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.9e-73 280.8 424 45.8
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.9e-73 280.0 532 41.9
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 4.9e-73 280.0 430 47.7
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 6.4e-73 279.6 765 39.3
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 8.4e-73 279.3 453 44.4
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.1e-72 278.9 394 46.4
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.1e-72 278.9 724 37.3
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.9e-72 278.1 430 47.0
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 3.2e-72 277.3 367 47.1
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 3.5e-71 273.9 482 41.7
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 1.3e-70 271.9 436 44.5
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 3.9e-70 270.4 425 44.2
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 8.6e-70 269.2 425 43.5
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.9e-69 268.1 666 41.6
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 7.3e-69 266.2 374 46.5
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 9.6e-69 265.8 758 39.4
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 1.2e-68 265.4 450 42.4
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.2e-68 265.4 416 44.5
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 1.4e-67 261.9 676 34.3
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.4e-67 261.2 486 39.9
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 4.0e-67 260.4 571 38.0
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.0e-66 258.1 417 42.2
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 4.4e-66 256.9 423 42.6
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 1.1e-64 252.3 344 46.8
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 1.4e-64 251.9 709 38.2
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.2e-64 250.4 502 39.4
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.7e-63 247.7 302 49.3
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 3.5e-63 247.3 414 42.5
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 6.0e-63 246.5 415 41.9
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.0e-62 245.7 398 43.0
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.0e-62 245.7 398 43.0
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.7e-62 245.0 449 40.1
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 3.0e-62 244.2 908 33.4
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 8.7e-62 242.7 356 48.9
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 8.7e-62 242.7 421 42.0
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 7.6e-58 229.6 424 41.5
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.3e-57 228.8 440 40.0
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.8e-57 227.3 382 39.5
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.6e-55 221.9 407 40.0
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 2.7e-55 221.1 371 39.6
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 6.0e-55 219.9 195 60.5
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.0e-54 219.2 440 38.0
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 1.5e-53 215.3 248 49.6
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 2.5e-53 214.5 385 39.5
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 9.6e-53 212.6 441 37.9
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.1e-52 211.5 417 36.9
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 3.7e-52 210.7 442 38.2
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.1e-51 209.1 171 63.2
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.4e-51 208.8 216 55.1
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.9e-49 201.1 141 69.5
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.4e-48 198.7 483 32.9
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.6e-47 195.3 184 52.7
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.0e-46 191.0 288 42.7
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.7e-41 175.3 197 50.8
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 2.3e-38 164.9 191 47.1
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 2.5e-37 161.4 204 46.6
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.8e-36 157.9 156 53.2
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.8e-35 155.2 367 34.9
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.8e-35 155.2 155 51.6
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.9e-32 145.2 139 54.0
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 2.1e-31 141.7 208 39.4
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.5e-29 134.8 217 41.5
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.6e-26 124.8 236 40.7
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.9e-24 118.6 93 64.5
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-23 115.5 93 63.4
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 4.4e-21 107.5 96 58.3
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 8.5e-17 93.2 71 62.0
Hma1.2p1_1100F.1_g257070 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.0e-13 82.0 197 36.5
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 2.6e-13 81.6 207 30.4
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 4.8e-12 77.4 114 41.2
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 2.2e-09 68.6 95 42.1
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.9e-09 68.2 86 37.2
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 1.2e-07 62.8 104 38.5


User provided reference genes

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