Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 1.3e-55 219.5 118 100.0
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.7e-47 192.6 118 86.4
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.7e-47 192.6 118 86.4
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.7e-47 192.6 118 86.4
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.7e-47 192.6 118 86.4
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.9e-46 189.1 118 85.6
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 6.2e-45 184.1 118 80.5
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.8e-44 182.6 118 81.4
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 3.1e-44 181.8 118 79.7
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 4.0e-44 181.4 118 78.8
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 4.0e-44 181.4 118 78.8
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 4.0e-44 181.4 118 80.5
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 6.8e-44 180.6 118 80.5
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 2.0e-43 179.1 118 78.8
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 2.0e-43 179.1 118 78.8
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 2.0e-43 179.1 117 80.3
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-43 178.7 118 79.7
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-43 178.7 118 79.7
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-43 178.7 118 79.7
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-43 178.7 118 79.7
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-43 178.7 118 79.7
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-43 178.7 118 79.7
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-43 178.7 118 79.7
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 3.4e-43 178.3 118 78.0
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 4.4e-43 177.9 118 78.8
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.8e-43 177.6 118 79.7
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 7.5e-43 177.2 118 79.7
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 7.5e-43 177.2 118 79.7
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 7.5e-43 177.2 117 77.8
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 9.8e-43 176.8 116 79.3
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 9.8e-43 176.8 116 79.3
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 9.8e-43 176.8 116 79.3
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 1.7e-42 176.0 118 78.8
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 3.7e-42 174.9 118 77.1
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 6.4e-42 174.1 115 79.1
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 2.4e-41 172.2 118 76.3
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 3.2e-41 171.8 118 76.3
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 9.2e-41 170.2 118 74.6
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 9.2e-41 170.2 116 77.6
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 3.5e-40 168.3 116 75.9
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 6.0e-40 167.5 118 73.7
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 7.8e-40 167.2 118 73.7
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 1.7e-39 166.0 118 74.6
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 3.3e-38 161.8 116 74.1
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 7.3e-38 160.6 116 75.0
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-37 159.8 107 76.6
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-37 157.9 104 77.9
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-37 157.9 104 77.9
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 4.7e-37 157.9 104 77.9
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 8.1e-37 157.1 118 69.5
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 8.1e-37 157.1 108 75.0
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 1.1e-36 156.8 114 74.6
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.8e-36 156.0 116 71.6
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-34 149.1 106 73.6
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 2.9e-34 148.7 104 75.0
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 8.4e-34 147.1 101 75.2
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 2.4e-33 145.6 95 83.2
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.1e-33 144.1 96 80.2
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 3.9e-31 138.3 84 88.1
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 6.2e-29 131.0 107 69.2
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 3.4e-27 125.2 81 84.0
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 3.4e-27 125.2 85 78.8
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.2e-26 122.5 104 69.2
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 2.2e-26 122.5 78 87.2
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 7.1e-25 117.5 84 77.4
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 2.7e-24 115.5 74 86.5
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 7.8e-24 114.0 85 76.5
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 5.1e-23 111.3 106 59.4
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 5.3e-20 101.3 80 73.8
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 4.2e-17 91.7 62 80.6
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 2.3e-15 85.9 53 83.0
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 6.7e-15 84.3 87 64.4
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 2.5e-14 82.4 59 69.5
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.6e-14 81.3 55 74.5
Aa31LG5G21710 Aethionema arabicum HOM05D007371 ORTHO05D009319 9.6e-14 80.5 84 57.1
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-12 76.6 61 62.3
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 9.0e-12 73.9 58 74.1
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 1.5e-11 73.2 45 88.9
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 4.5e-11 71.6 43 74.4
Lalb_Chr11g0071331 Lupinus albus HOM05D007371 ORTHO05D009319 9.9e-11 70.5 70 57.1
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 2.9e-10 68.9 42 88.1
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 1.4e-09 66.6 118 39.8
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.9e-09 66.2 43 67.4
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 2.4e-09 65.9 45 68.9
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 5.5e-09 64.7 43 65.1
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 5.5e-09 64.7 43 65.1
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 5.5e-09 64.7 43 65.1
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 2.1e-08 62.8 43 62.8
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.6e-08 61.6 114 40.4
Haze_02268 Corylus avellana HOM05D007371 ORTHO05D009319 7.9e-08 60.8 40 72.5
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 1.5e-06 56.6 43 55.8
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 1.5e-06 56.6 43 55.8
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 1.5e-06 56.6 43 55.8
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 1.5e-06 56.6 43 55.8


User provided reference genes

Program Settings