Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 9.2e-104 380.2 185 100.0
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.8e-99 365.9 179 98.9
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 2.1e-84 315.8 175 86.3
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 5.8e-82 307.8 174 81.6
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.7e-81 306.2 167 83.2
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 4.2e-80 301.6 174 80.5
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 7.1e-80 300.8 174 79.3
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 9.3e-80 300.4 170 79.4
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 9.3e-80 300.4 171 78.9
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 1.2e-79 300.1 168 82.7
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.6e-79 299.7 178 77.5
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 2.1e-79 299.3 168 81.0
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 2.1e-79 299.3 170 80.0
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 4.6e-79 298.1 166 80.7
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 6.0e-79 297.7 170 80.6
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 7.8e-79 297.4 168 79.8
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 7.8e-79 297.4 177 77.4
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-78 297.0 171 77.2
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.0e-78 297.0 168 80.4
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 79.4
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.3e-78 296.6 170 80.0
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.7e-78 296.2 171 79.5
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 1.7e-78 296.2 167 79.6
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.3e-78 295.8 178 76.4
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 3.0e-78 295.4 178 76.4
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.0e-78 295.4 170 79.4
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 3.9e-78 295.0 170 77.6
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 3.9e-78 295.0 167 80.8
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.9e-78 295.0 170 80.0
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 5.1e-78 294.7 170 77.1
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 6.6e-78 294.3 174 79.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 8.7e-78 293.9 174 76.4
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 8.7e-78 293.9 170 77.6
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 8.7e-78 293.9 171 77.8
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.1e-77 293.5 175 77.7
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 1.1e-77 293.5 168 78.6
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.5e-77 293.1 173 76.9
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.5e-77 293.1 173 76.9
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.9e-77 292.7 171 78.4
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.9e-77 292.7 175 78.3
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.5e-77 292.4 167 80.2
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.5e-77 292.4 167 80.2
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 4.3e-77 291.6 170 77.6
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 4.3e-77 291.6 173 76.3
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 5.6e-77 291.2 172 76.2
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 5.6e-77 291.2 174 75.3
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 5.6e-77 291.2 169 76.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 7.3e-77 290.8 166 80.1
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 7.3e-77 290.8 171 75.4
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 9.6e-77 290.4 167 79.0
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 1.3e-76 290.0 180 75.6
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.3e-76 290.0 171 74.9
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.3e-76 290.0 167 78.4
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.6e-76 289.7 175 74.3
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.1e-76 289.3 166 78.9
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 2.8e-76 288.9 182 71.4
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 3.6e-76 288.5 166 78.9
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 3.6e-76 288.5 180 73.9
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 3.6e-76 288.5 176 73.9
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 4.8e-76 288.1 166 76.5
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 4.8e-76 288.1 172 75.6
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 6.2e-76 287.7 167 78.4
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 6.2e-76 287.7 169 76.3
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 6.2e-76 287.7 186 73.7
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 6.2e-76 287.7 178 77.0
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.1e-75 287.0 169 76.3
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.1e-75 287.0 181 74.6
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 77.2
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 77.8
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 77.8
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.8e-75 286.2 167 77.8
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 2.4e-75 285.8 169 75.1
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 3.1e-75 285.4 178 73.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 3.1e-75 285.4 175 74.9
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 3.1e-75 285.4 166 78.3
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.0e-75 285.0 182 71.4
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 4.0e-75 285.0 167 75.4
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 4.0e-75 285.0 167 77.8
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 5.3e-75 284.6 171 74.3
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 6.9e-75 284.3 173 75.1
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 6.9e-75 284.3 166 77.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 6.9e-75 284.3 166 77.7
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 9.0e-75 283.9 162 81.5
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.2e-74 283.5 208 65.9
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.5e-74 283.1 169 75.1
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 2.6e-74 282.3 176 73.9
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.6e-74 282.3 167 77.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 3.4e-74 282.0 169 75.1
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 3.4e-74 282.0 172 73.8
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.5e-74 281.6 168 77.4
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.8e-74 281.2 164 78.7
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.7e-73 279.6 167 75.4
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 1.7e-73 279.6 169 74.6
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.7e-73 279.6 162 78.4
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 2.2e-73 279.3 167 75.4
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 2.2e-73 279.3 167 77.2
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 2.9e-73 278.9 166 75.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 3.8e-73 278.5 156 84.6
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 6.4e-73 277.7 166 72.3
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 6.4e-73 277.7 167 74.3
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.1e-72 276.9 161 77.0
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.4e-72 276.6 174 71.3
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.9e-72 276.2 166 73.5
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 3.2e-72 275.4 167 73.7
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 4.2e-72 275.0 173 75.1
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.2e-72 275.0 166 75.3
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 7.1e-72 274.2 166 75.3
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 7.1e-72 274.2 171 75.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 9.3e-72 273.9 173 74.0
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.2e-71 273.5 158 79.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.6e-71 271.6 158 79.1
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 6.0e-71 271.2 166 74.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 6.0e-71 271.2 168 70.8
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.0e-70 270.4 176 68.8
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.3e-70 270.0 177 71.8
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 6.7e-70 267.7 153 79.7
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.1e-69 266.9 168 69.6
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.5e-69 266.5 174 70.7
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.4e-69 264.2 239 56.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.3e-68 263.5 167 69.5
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 9.0e-67 257.3 173 67.1
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 3.4e-66 255.4 177 66.7
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 4.5e-66 255.0 150 78.7
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.7e-65 253.1 183 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 3.8e-65 251.9 165 67.3
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 6.4e-65 251.1 174 64.9
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 5.5e-64 248.1 168 67.3
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.8e-62 243.0 171 67.8
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.9e-61 239.6 167 65.3
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 4.8e-60 235.0 173 61.3
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 6.2e-60 234.6 168 65.5
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 7.6e-58 227.6 162 63.6
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.7e-57 226.5 173 61.8
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 3.2e-56 222.2 163 60.7
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 2.8e-52 209.1 169 55.6
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 6.9e-51 204.5 107 84.1
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.9e-48 196.4 109 83.5
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 1.5e-45 186.8 122 69.7
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.6e-44 183.3 180 48.9
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.3e-44 181.4 112 70.5
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 9.1e-43 177.6 108 74.1
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.5e-42 176.8 113 72.6
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 1.3e-41 173.7 173 50.9
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 4.2e-40 168.7 102 72.5
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 3.6e-39 165.6 174 52.9
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 6.1e-39 164.9 99 74.7
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 7.9e-39 164.5 109 68.8
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 7.9e-39 164.5 109 68.8
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 5.1e-38 161.8 102 70.6
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.8e-35 153.3 85 82.4
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.8e-35 153.3 103 67.0
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 1.0e-33 147.5 172 50.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.2e-28 129.8 76 72.4
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 4.8e-28 128.6 157 38.9
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 6.3e-28 128.3 141 51.8
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 1.7e-25 120.2 121 53.7
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 5.7e-21 105.1 63 73.0
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 5.3e-19 98.6 62 71.0
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.2e-18 97.4 183 29.5
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.0e-17 92.0 65 61.5
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.2e-15 87.4 68 61.8
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.0e-14 84.3 79 49.4
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.0e-14 84.3 66 62.1
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 5.4e-11 72.0 35 88.6
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 3.6e-07 59.3 48 60.4
PGSC0003DMG400005351 Solanum tuberosum HOM05D000190 ORTHO05D030681 3.0e-06 56.2 39 56.4


User provided reference genes

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