Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.7e-147 525.4 284 100.0
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.4e-132 476.5 287 92.3
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.8e-122 443.0 288 86.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.8e-122 443.0 306 82.0
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.8e-106 389.8 288 77.4
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.3e-100 368.6 294 71.4
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 7.2e-100 367.9 294 71.4
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.6e-99 366.7 288 71.5
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 3.6e-99 365.5 303 66.0
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.8e-98 363.2 298 71.1
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.8e-98 363.2 298 71.1
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.3e-98 362.8 298 71.1
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 4.0e-98 362.1 300 70.7
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 8.9e-98 360.9 291 73.2
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 1.5e-97 360.1 293 73.0
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 2.6e-97 359.4 291 72.2
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 2.6e-97 359.4 303 71.6
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 5.7e-97 358.2 289 70.9
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 1.7e-96 356.7 297 64.3
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 8.3e-96 354.4 294 69.4
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.4e-95 353.6 279 68.5
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 5.4e-95 351.7 297 69.4
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 7.0e-95 351.3 286 67.5
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 7.0e-95 351.3 303 70.0
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.2e-94 350.5 286 70.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.6e-94 350.1 301 64.1
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.0e-93 347.4 303 69.0
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.7e-93 346.7 298 64.1
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.7e-93 346.7 248 71.4
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 2.3e-93 346.3 248 73.4
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 2.3e-93 346.3 317 62.1
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.9e-93 345.5 217 77.9
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 5.0e-93 345.1 281 70.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.1e-92 344.0 303 69.0
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.1e-92 344.0 291 68.7
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.5e-92 343.6 294 69.7
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.9e-92 343.2 284 68.7
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.5e-92 342.8 291 69.8
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.8e-91 339.3 299 62.2
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 8.0e-91 337.8 290 68.6
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.0e-90 337.4 290 68.6
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.0e-90 337.4 293 68.9
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.8e-90 336.7 280 63.9
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 3.1e-90 335.9 294 69.0
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 5.2e-90 335.1 279 71.3
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 5.2e-90 335.1 239 79.1
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 5.2e-90 335.1 300 62.3
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 6.8e-90 334.7 308 65.6
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.0e-89 333.2 283 70.0
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.3e-88 330.5 283 70.3
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.3e-88 330.5 283 70.3
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 3.7e-88 328.9 284 70.4
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.1e-87 327.4 283 70.0
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.1e-87 327.4 235 71.9
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.4e-87 327.0 242 74.0
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.9e-87 326.6 286 62.2
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 2.4e-87 326.2 278 64.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.1e-87 325.5 296 62.2
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.7e-86 322.8 278 62.6
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 3.5e-86 322.4 253 76.3
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.6e-86 322.0 291 62.5
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.0e-85 320.9 300 60.7
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.3e-85 320.5 281 64.4
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.7e-85 320.1 239 74.9
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.7e-85 320.1 284 63.7
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 2.3e-85 319.7 210 75.2
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 3.0e-85 319.3 235 76.6
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 3.9e-85 318.9 250 67.2
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 4.3e-84 315.5 213 73.2
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 5.6e-84 315.1 241 73.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 7.3e-84 314.7 285 64.9
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 9.5e-84 314.3 287 65.9
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.5e-84 314.3 278 62.6
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.1e-83 313.2 284 67.3
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 4.7e-83 312.0 247 74.9
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.1e-82 310.8 274 67.2
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.4e-82 310.5 235 68.5
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.4e-82 310.5 216 77.3
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.8e-82 310.1 281 66.9
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 2.3e-82 309.7 282 65.6
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.7e-80 302.4 194 76.8
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 3.7e-80 302.4 226 67.7
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 8.3e-80 301.2 301 58.5
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.1e-79 300.8 283 57.6
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.9e-79 300.1 287 58.2
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.2e-79 297.7 281 63.7
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.6e-78 297.0 251 66.1
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.7e-78 296.2 284 64.1
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.5e-76 290.4 213 72.3
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 7.3e-76 288.1 261 59.0
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 9.5e-76 287.7 302 58.6
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 4.0e-74 282.3 247 64.0
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.2e-74 282.0 189 74.1
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 2.9e-72 276.2 212 65.6
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 9.2e-71 271.2 215 66.0
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.2e-70 270.8 305 52.1
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 4.6e-70 268.9 250 61.2
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 7.8e-70 268.1 228 72.8
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 3.9e-69 265.8 254 56.3
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.1e-68 264.2 209 64.1
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 7.3e-68 261.5 143 86.0
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.1e-67 260.0 284 60.2
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 3.2e-63 246.1 253 55.3
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 8.1e-59 231.5 226 65.0
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.8e-56 222.6 126 82.5
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 7.9e-46 188.3 235 51.9
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.5e-40 168.7 141 62.4
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.1e-39 167.9 134 64.9
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.6e-30 137.5 183 41.5
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.5e-28 131.0 167 61.1
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.3e-28 129.4 204 46.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.0e-26 121.7 177 44.6
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 3.4e-25 119.8 122 56.6
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 5.0e-24 115.9 114 59.6
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 5.0e-24 115.9 117 57.3
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.1e-23 114.8 64 82.8
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 4.2e-23 112.8 120 57.5
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 2.0e-20 104.0 114 53.5
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.5e-17 94.4 74 64.9
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.4e-17 93.2 133 37.6
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 5.5e-15 85.9 85 64.7
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 7.2e-15 85.5 55 74.5
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 3.6e-14 83.2 107 41.1
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 9.7e-12 75.1 109 50.5
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 2.6e-09 67.0 55 67.3
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.5e-07 59.3 146 30.8
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.2e-06 58.2 137 31.4
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 1.6e-06 57.8 30 86.7
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.1e-06 57.4 159 30.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.1e-06 57.4 139 30.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.7e-06 57.0 141 31.2


User provided reference genes

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