Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G249400 Populus trichocarpa HOM05D003423 ORTHO05D003910 3.3e-161 571.6 282 100.0
Sabra08G0005700 Salix brachista HOM05D003423 ORTHO05D003910 5.9e-94 348.2 279 68.1
Potri.008G009700 Populus trichocarpa HOM05D003423 ORTHO05D003910 1.2e-91 340.5 276 67.4
Eucgr.F03997 Eucalyptus grandis HOM05D003423 ORTHO05D003910 1.1e-76 290.8 277 60.3
QL05p083582 Quercus lobata HOM05D003423 ORTHO05D003910 7.5e-73 278.1 281 56.2
QL05p083734 Quercus lobata HOM05D003423 ORTHO05D003910 7.5e-73 278.1 281 56.2
Ciclev10027497m.g Citrus clementina HOM05D003423 ORTHO05D003910 1.4e-71 273.9 280 56.4
Prupe.3G168300 Prunus persica HOM05D003423 ORTHO05D003910 5.4e-71 271.9 277 57.8
Hma1.2p1_0090F.1_g045620 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 8.6e-69 264.6 276 55.4
RcHm_v2.0_Chr2g0150321 Rosa chinensis HOM05D003423 ORTHO05D003910 1.1e-68 264.2 277 56.3
Atru.chr1.2766 Acer truncatum HOM05D003423 ORTHO05D003910 9.5e-68 261.2 277 54.2
FvH4_6g37480 Fragaria vesca HOM05D003423 ORTHO05D003910 1.8e-66 256.9 276 55.1
vmacro18704 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 3.4e-65 252.7 274 53.3
PGR102G0515 Punica granatum HOM05D003423 ORTHO05D003910 7.5e-65 251.5 287 53.7
Cc04_g00490 Coffea canephora HOM05D003423 ORTHO05D003910 9.8e-65 251.1 272 55.1
SalBow6G3752 Salvia bowleyana HOM05D003423 ORTHO05D003910 2.9e-64 249.6 270 56.3
Actinidia33816 Actinidia chinensis HOM05D003423 ORTHO05D003910 3.7e-64 249.2 271 54.6
FAN14G2430 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.1e-63 247.7 281 53.4
Rhsim08G0246600 Rhododendron simsii HOM05D003423 ORTHO05D003910 9.2e-63 244.6 273 52.7
Peaxi162Scf00038g02438 Petunia axillaris HOM05D003423 ORTHO05D003910 1.6e-62 243.8 271 53.9
Lj9A540T81 Lonicera japonica HOM05D003423 ORTHO05D003910 2.0e-62 243.4 274 53.3
VMungo1080G0425 Vigna mungo HOM05D003423 ORTHO05D003910 2.0e-62 243.4 277 52.3
FAN02G3068 Fragaria x ananassa HOM05D003423 ORTHO05D003910 4.6e-62 242.3 280 52.9
Nitab4.5_0001691g0030 Nicotiana tabacum HOM05D003423 ORTHO05D003910 3.0e-61 239.6 273 53.8
CAN.G790.42 Capsicum annuum HOM05D003423 ORTHO05D003910 3.9e-61 239.2 292 52.1
FAN09G1601 Fragaria x ananassa HOM05D003423 ORTHO05D003910 5.0e-61 238.8 280 52.5
Lj3g0006153 Lotus japonicus HOM05D003423 ORTHO05D003910 5.0e-61 238.8 276 52.2
Nitab4.5_0002885g0030 Nicotiana tabacum HOM05D003423 ORTHO05D003910 2.5e-60 236.5 272 53.3
PGSC0003DMG400009184 Solanum tuberosum HOM05D003423 ORTHO05D003910 3.3e-60 236.1 273 53.5
SGA_v2.0_scaffold122G33294 Striga asiatica HOM05D003423 ORTHO05D003910 5.6e-60 235.3 268 53.7
MBI16_g46430_MAGBIO Magnolia biondii HOM05D003423 ORTHO05D003910 1.6e-59 233.8 313 47.3
GSVIVG01014644001 Vitis vinifera HOM05D003423 ORTHO05D003910 2.0e-57 226.9 326 45.7
ATR0580G345 Amborella trichopoda HOM05D003423 ORTHO05D003910 2.6e-57 226.5 306 46.7
MD09G1157700 Malus domestica HOM05D003423 ORTHO05D003910 3.4e-57 226.1 255 51.4
FAN05G4329 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.3e-56 224.2 264 51.9
CiPaw.12G136700 Carya illinoinensis HOM05D003423 ORTHO05D003910 1.7e-56 223.8 306 46.7
Hund05673 Selenicereus undatus HOM05D003423 ORTHO05D003910 8.3e-56 221.5 282 48.6
Oeu051387.2 Olea europaea HOM05D003423 ORTHO05D003910 1.4e-55 220.7 256 53.5
Manes.15G061600 Manihot esculenta HOM05D003423 ORTHO05D003910 4.1e-55 219.2 278 47.1
CANSAT11G1165 Cannabis sativa HOM05D003423 ORTHO05D003910 1.2e-54 217.6 303 45.2
ClCG04G000610 Citrullus lanatus HOM05D003423 ORTHO05D003910 1.2e-54 217.6 278 48.6
Aqoxy2G03521 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 1.6e-54 217.2 314 43.6
EL10Ac7g18155 Beta vulgaris HOM05D003423 ORTHO05D003910 1.6e-54 217.2 279 48.4
Sed0010386 Sechium edule HOM05D003423 ORTHO05D003910 1.6e-54 217.2 275 49.1
TAR624G0752 Trochodendron aralioides HOM05D003423 ORTHO05D003910 2.1e-54 216.9 326 44.8
DCAR_007666 Daucus carota HOM05D003423 ORTHO05D003910 1.3e-53 214.2 279 48.7
Lsat_1_v5_gn_4_89280 Lactuca sativa HOM05D003423 ORTHO05D003910 1.7e-53 213.8 302 47.0
CiPaw.11G202400 Carya illinoinensis HOM05D003423 ORTHO05D003910 6.6e-53 211.8 378 39.2
Nn1g07481 Nelumbo nucifera HOM05D003423 ORTHO05D003910 6.6e-53 211.8 323 42.4
Thecc.07G016500 Theobroma cacao HOM05D003423 ORTHO05D003910 8.6e-53 211.5 335 41.8
CSS0038448 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 1.1e-52 211.1 325 42.8
Gohir.A04G002900 Gossypium hirsutum HOM05D003423 ORTHO05D003910 3.3e-52 209.5 350 40.6
PSO782G1032 Papaver somniferum HOM05D003423 ORTHO05D003910 3.3e-52 209.5 328 43.3
Gorai.013G153900 Gossypium raimondii HOM05D003423 ORTHO05D003910 4.3e-52 209.1 363 39.4
Gohir.D13G137300 Gossypium hirsutum HOM05D003423 ORTHO05D003910 5.6e-52 208.8 350 40.3
CSS0034763 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 2.1e-51 206.8 324 42.6
Duzib213G0099 Durio zibethinus HOM05D003423 ORTHO05D003910 2.8e-51 206.5 353 40.2
PSO063G5220 Papaver somniferum HOM05D003423 ORTHO05D003910 2.8e-51 206.5 329 41.9
Gorai.010G207500 Gossypium raimondii HOM05D003423 ORTHO05D003910 4.7e-51 205.7 343 41.7
Ca_00986_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 6.2e-51 205.3 262 50.4
Ca_01000_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 6.2e-51 205.3 262 50.4
TAR626G1285 Trochodendron aralioides HOM05D003423 ORTHO05D003910 6.2e-51 205.3 327 42.2
HanXRQChr09g0277351 Helianthus annuus HOM05D003423 ORTHO05D003910 1.1e-50 204.5 264 47.7
QL08p004807 Quercus lobata HOM05D003423 ORTHO05D003910 1.4e-50 204.1 364 39.0
Dinv10321 Davidia involucrata HOM05D003423 ORTHO05D003910 1.8e-50 203.8 371 39.6
Aqoxy2G00648 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 2.3e-50 203.4 303 42.9
Hma1.2p1_0036F.1_g022545 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.5e-49 200.7 384 37.5
Hma1.2p1_0036F.1_g022550 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.5e-49 200.7 384 37.5
HPP92_018337 Vanilla planifolia HOM05D003423 ORTHO05D003910 1.5e-49 200.7 289 43.9
Rhsim04G0013800 Rhododendron simsii HOM05D003423 ORTHO05D003910 5.8e-49 198.7 395 37.2
Aqoxy6G02866 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 9.9e-49 198.0 328 39.9
TWI39G0701 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 1.3e-48 197.6 365 38.9
Nn3g19300 Nelumbo nucifera HOM05D003423 ORTHO05D003910 3.7e-48 196.1 244 50.0
Oeu041432.1 Olea europaea HOM05D003423 ORTHO05D003910 4.9e-48 195.7 313 41.5
vmacro09657 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 8.4e-48 194.9 355 39.4
Actinidia37163 Actinidia chinensis HOM05D003423 ORTHO05D003910 1.4e-47 194.1 360 39.4
CDE04G0040 Ceratophyllum demersum HOM05D003423 ORTHO05D003910 1.9e-47 193.7 277 45.5
MSTRG.14479 Avicennia marina HOM05D003423 ORTHO05D003910 2.4e-47 193.4 348 37.9
Phvul.006G055600 Phaseolus vulgaris HOM05D003423 ORTHO05D003910 2.4e-47 193.4 349 39.5
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 4.1e-47 192.6 321 41.4
TPR.G30741 Trifolium pratense HOM05D003423 ORTHO05D003910 5.4e-47 192.2 354 40.1
Atru.chr2.3667 Acer truncatum HOM05D003423 ORTHO05D003910 7.1e-47 191.8 353 39.7
THA.LOC104810286 Tarenaya hassleriana HOM05D003423 ORTHO05D003910 7.1e-47 191.8 337 40.7
BolC3t21631H Brassica oleracea HOM05D003423 ORTHO05D003910 1.6e-46 190.7 326 39.0
C03p92860 Brassica napus HOM05D003423 ORTHO05D003910 4.6e-46 189.1 323 39.3
BolC3t21592H Brassica oleracea HOM05D003423 ORTHO05D003910 4.6e-46 189.1 323 39.3
Glyma.18G078800 Glycine max HOM05D003423 ORTHO05D003910 7.8e-46 188.3 346 38.2
VMungo0540G0232 Vigna mungo HOM05D003423 ORTHO05D003910 7.8e-46 188.3 348 38.8
RcHm_v2.0_Chr5g0054021 Rosa chinensis HOM05D003423 ORTHO05D003910 1.0e-45 188.0 346 37.3
A08p00550 Brassica napus HOM05D003423 ORTHO05D003910 2.3e-45 186.8 340 38.2
Eucgr.F02068 Eucalyptus grandis HOM05D003423 ORTHO05D003910 3.0e-45 186.4 366 36.9
TWI38G0990 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 3.0e-45 186.4 366 38.8
HanXRQChr11g0333391 Helianthus annuus HOM05D003423 ORTHO05D003910 3.9e-45 186.0 329 39.8
Hund01908 Selenicereus undatus HOM05D003423 ORTHO05D003910 3.9e-45 186.0 355 37.7
SGA_v2.0_scaffold42G16002 Striga asiatica HOM05D003423 ORTHO05D003910 3.9e-45 186.0 315 40.0
Lalb_Chr15g0081991 Lupinus albus HOM05D003423 ORTHO05D003910 5.1e-45 185.7 357 37.5
Medtr3g058580 Medicago truncatula HOM05D003423 ORTHO05D003910 8.6e-45 184.9 347 40.6
MELO3C024918.2 Cucumis melo HOM05D003423 ORTHO05D003910 1.1e-44 184.5 382 35.9
arahy.Tifrunner.gnm1.ann1.FCEI8S Arachis hypogaea HOM05D003423 ORTHO05D003910 1.5e-44 184.1 357 37.0
arahy.Tifrunner.gnm1.ann1.HUB5JH Arachis hypogaea HOM05D003423 ORTHO05D003910 1.5e-44 184.1 356 36.5
C03p93330 Brassica napus HOM05D003423 ORTHO05D003910 1.5e-44 184.1 323 38.7
CsaV3_7G018340 Cucumis sativus L. HOM05D003423 ORTHO05D003910 1.5e-44 184.1 376 38.0
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 1.5e-44 184.1 354 39.0
Os06g0191200 Oryza sativa ssp. japonica HOM05D003423 ORTHO05D003910 1.9e-44 183.7 289 42.6
arahy.Tifrunner.gnm1.ann1.08VBYE Arachis hypogaea HOM05D003423 ORTHO05D003910 2.5e-44 183.3 356 36.5
Manes.03G139900 Manihot esculenta HOM05D003423 ORTHO05D003910 2.5e-44 183.3 224 50.0
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 3.3e-44 183.0 365 36.4
Lsat_1_v5_gn_1_26441 Lactuca sativa HOM05D003423 ORTHO05D003910 4.3e-44 182.6 310 41.3
Lj1A888G39 Lonicera japonica HOM05D003423 ORTHO05D003910 4.3e-44 182.6 366 36.9
BcaC01g01534 Brassica carinata HOM05D003423 ORTHO05D003910 5.6e-44 182.2 318 39.0
SHI26527 Sapria himalayana HOM05D003423 ORTHO05D003910 7.3e-44 181.8 301 41.2
AT1G55915 Arabidopsis thaliana HOM05D003423 ORTHO05D003910 1.6e-43 180.6 208 50.0
Prupe.4G239900 Prunus persica HOM05D003423 ORTHO05D003910 1.6e-43 180.6 364 36.5
Haze_09806 Corylus avellana HOM05D003423 ORTHO05D003910 1.1e-42 177.9 368 36.7
Ca_12436_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 1.8e-42 177.2 357 36.4
ClCG09G021170 Citrullus lanatus HOM05D003423 ORTHO05D003910 1.8e-42 177.2 355 36.9
Sp1g41520 Schrenkiella parvula HOM05D003423 ORTHO05D003910 4.0e-42 176.0 258 43.4
Sc16g0007990 Simmondsia chinensis HOM05D003423 ORTHO05D003910 4.0e-42 176.0 358 36.9
BraA08t32074Z Brassica rapa HOM05D003423 ORTHO05D003910 5.2e-42 175.6 263 43.3
Sabra10G0194100 Salix brachista HOM05D003423 ORTHO05D003910 1.5e-41 174.1 275 46.5
BraA08t32113Z Brassica rapa HOM05D003423 ORTHO05D003910 2.0e-41 173.7 245 44.1
AL1G64060 Arabidopsis lyrata HOM05D003423 ORTHO05D003910 5.8e-41 172.2 208 48.1
EL10Ac4g07604 Beta vulgaris HOM05D003423 ORTHO05D003910 7.6e-41 171.8 342 38.0
SMO361G0751 Selaginella moellendorffii HOM05D003423 ORTHO05D003910 7.6e-41 171.8 274 40.9
PGSC0003DMG400029797 Solanum tuberosum HOM05D003423 ORTHO05D003910 7.6e-41 171.8 245 46.5
Ah.06g181290 Amaranthus hybridus HOM05D003423 ORTHO05D003910 9.9e-41 171.4 377 35.0
FAN11G0659 Fragaria x ananassa HOM05D003423 ORTHO05D003910 9.9e-41 171.4 367 36.0
CARHR045630 Cardamine hirsuta HOM05D003423 ORTHO05D003910 1.3e-40 171.0 243 45.3
Nitab4.5_0000163g0280 Nicotiana tabacum HOM05D003423 ORTHO05D003910 1.7e-40 170.6 206 49.0
Sopen12g007570 Solanum pennellii HOM05D003423 ORTHO05D003910 1.7e-40 170.6 359 35.4
Solyc12g015660.2 Solanum lycopersicum HOM05D003423 ORTHO05D003910 2.2e-40 170.2 359 35.4
FAN21G0447 Fragaria x ananassa HOM05D003423 ORTHO05D003910 3.8e-40 169.5 365 35.1
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 3.8e-40 169.5 365 35.1
Potri.011G092900 Populus trichocarpa HOM05D003423 ORTHO05D003910 4.9e-40 169.1 382 35.1
DCAR_017083 Daucus carota HOM05D003423 ORTHO05D003910 8.4e-40 168.3 386 33.7
Aa31LG10G260 Aethionema arabicum HOM05D003423 ORTHO05D003910 1.4e-39 167.5 267 43.4
unitig_27.g25148 Utricularia gibba HOM05D003423 ORTHO05D003910 2.4e-39 166.8 320 35.9
MD11G1201700 Malus domestica HOM05D003423 ORTHO05D003910 7.1e-39 165.2 389 33.9
MSTRG.22510 Avicennia marina HOM05D003423 ORTHO05D003910 2.1e-38 163.7 183 54.6
Actinidia21857 Actinidia chinensis HOM05D003423 ORTHO05D003910 4.6e-38 162.5 191 52.4
Aqoxy102s004 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 1.0e-37 161.4 309 36.9
AUR62001338 Chenopodium quinoa HOM05D003423 ORTHO05D003910 2.3e-37 160.2 310 38.1
MELO3C009034.2 Cucumis melo HOM05D003423 ORTHO05D003910 2.3e-37 160.2 170 57.6
Migut.H01764 Erythranthe guttata HOM05D003423 ORTHO05D003910 3.0e-37 159.8 333 34.5
Pp3c5_3280 Physcomitrium patens HOM05D003423 ORTHO05D003910 3.9e-37 159.5 334 35.3
AUR62025667 Chenopodium quinoa HOM05D003423 ORTHO05D003910 4.3e-36 156.0 318 36.2
Thhalv10011589m.g Eutrema salsugineum HOM05D003423 ORTHO05D003910 4.3e-36 156.0 338 34.0
Peaxi162Scf00955g00007 Petunia axillaris HOM05D003423 ORTHO05D003910 1.6e-35 154.1 357 34.5
Carub.0001s4451 Capsella rubella HOM05D003423 ORTHO05D003910 2.8e-35 153.3 177 49.2
Mapoly0109s0050 Marchantia polymorpha HOM05D003423 ORTHO05D003910 1.4e-34 151.0 193 45.1
AagrBONN_evm.TU.Sc2ySwM_228.5488 Anthoceros agrestis HOM05D003423 ORTHO05D003910 4.0e-34 149.4 194 47.4
Zm00001eb374280 Zea mays HOM05D003423 ORTHO05D003910 4.0e-34 149.4 290 37.6
Dinv37806 Davidia involucrata HOM05D003423 ORTHO05D003910 5.3e-34 149.1 171 53.8
CBR_g12763 Chara braunii HOM05D003423 ORTHO05D003910 1.2e-33 147.9 195 44.1
Cpa.g.sc12.172 Carica papaya HOM05D003423 ORTHO05D003910 3.4e-33 146.4 316 35.1
Cc05_g14820 Coffea canephora HOM05D003423 ORTHO05D003910 7.1e-31 138.7 324 35.5
Nitab4.5_0002517g0010 Nicotiana tabacum HOM05D003423 ORTHO05D003910 7.9e-30 135.2 352 33.2
AUR62017070 Chenopodium quinoa HOM05D003423 ORTHO05D003910 6.6e-29 132.1 395 30.9
Medtr2g105670 Medicago truncatula HOM05D003423 ORTHO05D003910 1.5e-28 131.0 260 34.2
AUR62036422 Chenopodium quinoa HOM05D003423 ORTHO05D003910 1.4e-26 124.4 405 28.4
AUR62036428 Chenopodium quinoa HOM05D003423 ORTHO05D003910 1.4e-26 124.4 405 28.4
Lj6g0002743 Lotus japonicus HOM05D003423 ORTHO05D003910 3.4e-25 119.8 365 31.0
HPP92_017868 Vanilla planifolia HOM05D003423 ORTHO05D003910 9.9e-25 118.2 202 38.6
Ciclev10010194m.g Citrus clementina HOM05D003423 ORTHO05D003910 6.4e-24 115.5 287 33.4
Gohir.A04G133100 Gossypium hirsutum HOM05D003423 ORTHO05D003910 1.1e-23 114.8 304 31.6
Psat7g121520 Pisum sativum HOM05D003423 ORTHO05D003910 1.2e-22 111.3 266 33.8
BcaC06g31883 Brassica carinata HOM05D003423 ORTHO05D003910 1.6e-22 110.9 233 35.2
COL.COLO4_09809 Corchorus olitorius HOM05D003423 ORTHO05D003910 3.5e-22 109.8 242 35.5
Sed0002105 Sechium edule HOM05D003423 ORTHO05D003910 8.7e-21 105.1 258 32.9
Cre07.g333850 Chlamydomonas reinhardtii HOM05D003423 ORTHO05D003910 7.4e-20 102.1 203 37.9
SEGI_22543 Sequoiadendron giganteum HOM05D003423 ORTHO05D003910 2.1e-19 100.5 191 38.7
SEGI_36313 Sequoiadendron giganteum HOM05D003423 ORTHO05D003910 1.4e-15 87.8 60 70.0
Gohir.A06G044200 Gossypium hirsutum HOM05D003423 ORTHO05D003910 7.1e-15 85.5 89 58.4
MCO09G622 Micromonas commoda HOM05D003423 ORTHO05D003910 7.1e-15 85.5 163 39.3
EL10Ac8g20245 Beta vulgaris HOM05D003423 ORTHO05D003910 1.6e-14 84.3 64 64.1
Gohir.D06G176332 Gossypium hirsutum HOM05D003423 ORTHO05D003910 6.7e-13 79.0 66 62.1
PRCOL_00000756 Prasinoderma coloniale HOM05D003423 ORTHO05D003910 1.9e-12 77.4 166 35.5
Gorai.010G207400 Gossypium raimondii HOM05D003423 ORTHO05D003910 5.7e-12 75.9 68 58.8
AUR62037470 Chenopodium quinoa HOM05D003423 ORTHO05D003910 1.3e-11 74.7 91 47.3
Psat5g170040 Pisum sativum HOM05D003423 ORTHO05D003910 3.7e-11 73.2 191 32.5
Gohir.A01G137565 Gossypium hirsutum HOM05D003423 ORTHO05D003910 1.1e-10 71.6 266 27.8
AUR62028647 Chenopodium quinoa HOM05D003423 ORTHO05D003910 5.3e-10 69.3 185 33.0
ECA240G2479 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-09 68.2 123 39.0
Cfa022425 Carpinus fangiana HOM05D003423 ORTHO05D003910 1.7e-08 64.3 188 32.4
QL05p083713 Quercus lobata HOM05D003423 ORTHO05D003910 7.9e-06 55.5 43 60.5


User provided reference genes

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