Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 4.4e-119 431.4 235 100.0
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 3.2e-93 345.5 236 85.6
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 4.0e-88 328.6 237 83.1
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.7e-86 323.2 239 78.7
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.4e-85 319.3 236 79.2
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 2.1e-84 316.2 240 80.4
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 6.0e-84 314.7 239 79.9
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 5.6e-82 308.1 247 75.3
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 5.6e-82 308.1 241 76.8
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 3.8e-78 295.4 248 75.4
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 8.4e-78 294.3 241 70.1
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 2.5e-77 292.7 239 74.1
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 9.3e-77 290.8 237 73.8
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.6e-76 290.0 243 69.5
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 5.1e-75 285.0 242 71.5
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.7e-75 284.6 243 72.0
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-74 283.9 242 70.7
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.9e-74 283.1 242 71.1
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 2.5e-74 282.7 240 71.2
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 5.7e-74 281.6 244 75.8
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.3e-73 280.4 240 72.1
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 6.3e-73 278.1 254 71.3
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.4e-72 276.9 249 69.1
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.8e-72 276.6 216 76.4
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.8e-72 276.6 241 71.4
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 1.8e-72 276.6 243 70.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 1.8e-72 276.6 240 68.8
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 4.1e-72 275.4 243 69.5
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 2.2e-70 269.6 271 66.8
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 2.9e-70 269.2 241 70.1
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.1e-69 267.3 246 64.6
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 9.3e-69 264.2 240 64.6
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 2.3e-67 259.6 239 66.5
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.0e-67 259.2 260 65.4
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 5.1e-67 258.5 258 64.7
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.7e-66 255.0 238 64.7
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.7e-66 254.2 233 66.1
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 9.7e-66 254.2 254 65.4
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 4.8e-65 251.9 253 64.8
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 8.2e-65 251.1 245 65.7
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.1e-64 250.8 253 64.8
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 2.4e-64 249.6 262 64.1
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.4e-64 249.6 244 64.3
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.4e-64 249.6 243 66.3
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 3.1e-64 249.2 245 64.1
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.2e-63 247.3 239 61.9
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 2.6e-63 246.1 258 62.0
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 7.7e-63 244.6 242 65.7
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 2.2e-62 243.0 237 62.9
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 7.2e-61 238.0 251 62.9
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 6.1e-60 235.0 245 62.0
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.9e-60 234.6 239 64.4
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.4e-59 233.8 231 66.7
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.3e-59 233.0 268 58.2
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 3.9e-59 232.3 234 66.2
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 6.7e-59 231.5 239 64.4
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 2.0e-58 229.9 167 82.6
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.5e-58 229.6 239 57.7
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 4.3e-58 228.8 262 57.6
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 4.3e-58 228.8 287 57.8
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 5.7e-58 228.4 197 71.1
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 9.7e-58 227.6 255 62.0
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.3e-57 227.3 245 60.8
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.2e-57 226.5 243 60.5
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.8e-57 226.1 243 60.5
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 1.1e-56 224.2 239 58.6
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.8e-56 223.4 234 61.5
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 4.1e-56 222.2 245 58.4
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.2e-55 220.7 233 63.1
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.5e-55 220.3 252 60.7
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.0e-55 219.9 238 59.2
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 2.6e-55 219.5 237 58.6
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 5.9e-55 218.4 238 57.6
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 7.7e-55 218.0 252 60.3
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.2e-54 216.5 259 57.1
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.4e-53 213.8 237 57.8
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.5e-53 213.0 237 58.6
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 1.6e-52 210.3 244 55.7
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 1.6e-52 210.3 245 59.2
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 6.7e-51 204.9 283 54.1
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.1e-50 204.1 234 61.1
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.8e-48 196.8 247 57.1
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 9.1e-48 194.5 247 59.1
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.6e-47 193.7 233 55.8
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 4.5e-47 192.2 239 54.4
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 7.7e-47 191.4 256 53.5
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.0e-46 188.7 230 53.5
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 5.0e-46 188.7 275 50.2
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 1.1e-45 187.6 243 55.6
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 2.5e-45 186.4 169 62.7
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 5.5e-45 185.3 243 54.3
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.2e-44 184.1 232 49.1
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.1e-44 183.3 248 50.8
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.7e-44 183.0 246 54.9
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 3.6e-44 182.6 242 49.6
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 8.0e-44 181.4 239 51.9
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-43 180.6 236 52.5
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 4.0e-43 179.1 238 50.4
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 8.8e-43 177.9 277 46.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.1e-42 177.6 208 60.1
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 3.3e-42 176.0 236 52.5
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.3e-42 176.0 247 51.8
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 4.4e-42 175.6 259 49.4
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 9.7e-42 174.5 246 52.4
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.2e-41 173.3 247 51.0
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-40 171.0 240 51.2
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 2.4e-40 169.9 240 53.3
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 2.4e-40 169.9 240 53.3
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 4.1e-40 169.1 246 51.2
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 7.0e-40 168.3 243 51.9
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.0e-39 166.8 231 53.7
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 3.5e-39 166.0 239 52.3
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 5.0e-38 162.2 239 51.9
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.5e-37 160.6 245 46.1
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 1.9e-37 160.2 171 59.1
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 3.2e-37 159.5 234 50.4
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 5.5e-37 158.7 236 50.0
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 5.5e-37 158.7 262 48.9
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 2.1e-36 156.8 250 48.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 3.6e-36 156.0 239 52.3
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 4.7e-36 155.6 261 48.7
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 6.1e-36 155.2 276 48.2
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-35 153.7 267 46.8
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.8e-35 153.7 265 47.2
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 1.8e-35 153.7 267 46.8
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.8e-35 153.7 265 47.2
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 4.0e-35 152.5 229 53.3
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.3e-33 147.5 156 53.2
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.2e-33 146.7 264 46.6
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 6.3e-33 145.2 193 53.4
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 7.0e-32 141.7 254 48.8
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.0e-31 140.2 274 45.3
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.6e-28 130.6 260 44.6
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.8e-27 127.1 156 51.3
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-24 117.9 153 47.1
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.4e-24 117.5 243 41.2
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 3.1e-24 116.3 238 39.1
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.6e-23 114.0 161 45.3
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.6e-22 108.6 95 62.1
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.6e-21 105.5 100 59.0
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.8e-16 90.5 75 77.3
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 4.1e-16 89.4 149 40.9
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 3.1e-11 73.2 143 37.1
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.9e-09 66.6 36 86.1
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 3.7e-09 66.2 130 36.9
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.4e-08 64.3 138 37.0
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 4.1e-08 62.8 135 34.8
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 7.0e-08 62.0 135 35.6
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 7.0e-08 62.0 136 36.8
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 2.7e-07 60.1 135 32.6
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.6e-07 59.3 135 37.0
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 6.0e-07 58.9 137 33.6
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 1.0e-06 58.2 144 35.4
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.0e-06 58.2 135 34.1
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.7e-06 57.4 130 34.6
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.7e-06 57.4 137 35.8
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 3.9e-06 56.2 135 33.3
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 3.9e-06 56.2 135 33.3
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 5.0e-06 55.8 139 36.0
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 5.0e-06 55.8 135 31.1
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 6.6e-06 55.5 135 31.9
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 8.6e-06 55.1 135 34.1


User provided reference genes

Program Settings