Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.2e-137 492.3 244 100.0
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.9e-129 464.5 241 95.9
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 4.0e-115 418.3 241 86.7
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 7.6e-90 334.3 238 69.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.2e-89 332.8 240 68.8
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.8e-89 332.0 240 68.8
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 5.7e-85 318.2 238 64.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.6e-84 316.6 241 66.8
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.8e-84 315.8 240 63.3
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.3e-78 296.2 237 61.2
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.8e-78 294.3 237 59.1
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.3e-77 292.4 237 59.5
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 7.4e-77 291.2 238 60.5
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.7e-74 281.2 217 63.1
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.1e-69 267.3 238 53.8
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.3e-68 263.8 238 52.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 7.0e-67 258.1 235 51.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 4.5e-66 255.4 235 50.6
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 7.7e-66 254.6 235 51.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 7.7e-66 254.6 239 51.9
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.9e-65 252.7 235 54.0
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.9e-65 252.7 236 51.3
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.0e-65 251.9 238 50.8
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 6.5e-65 251.5 236 53.8
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 8.5e-65 251.1 238 51.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.4e-64 250.4 239 50.2
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.4e-64 250.4 238 51.7
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.2e-64 248.8 239 50.2
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 9.4e-64 247.7 235 52.8
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 8.0e-63 244.6 235 52.3
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.0e-62 244.2 235 52.3
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.0e-62 244.2 238 50.4
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.0e-62 244.2 235 50.2
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.8e-62 243.4 238 48.7
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.3e-62 243.0 234 51.3
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.3e-62 243.0 239 51.9
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.0e-62 242.7 235 50.6
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.7e-62 241.5 238 49.6
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 8.8e-62 241.1 238 49.6
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 8.8e-62 241.1 249 51.4
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 8.8e-62 241.1 235 49.4
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.5e-61 240.4 235 49.4
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.0e-61 240.0 235 48.9
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 4.4e-61 238.8 235 51.1
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 7.4e-61 238.0 234 47.9
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 9.7e-61 237.7 232 49.6
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 9.7e-61 237.7 235 49.4
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 9.7e-61 237.7 232 48.7
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.7e-60 236.9 238 47.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 1.7e-60 236.9 240 50.8
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.7e-60 236.9 238 49.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.2e-60 236.5 236 48.7
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 2.8e-60 236.1 238 49.2
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.7e-60 235.7 235 50.2
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.7e-60 235.7 235 50.2
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 3.7e-60 235.7 238 49.6
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 4.8e-60 235.3 238 49.6
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 6.3e-60 235.0 238 49.2
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 8.2e-60 234.6 238 49.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.1e-59 234.2 238 49.2
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.8e-59 233.4 236 46.2
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.4e-59 233.0 235 47.2
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.1e-59 232.6 238 47.9
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 4.1e-59 232.3 238 47.1
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 4.1e-59 232.3 239 49.4
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.3e-59 231.9 254 46.1
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 5.3e-59 231.9 242 48.3
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 9.1e-59 231.1 234 50.4
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.0e-58 229.9 235 47.7
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 4.5e-58 228.8 238 47.5
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 4.5e-58 228.8 236 45.8
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.5e-58 228.8 235 49.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.5e-58 228.8 239 48.5
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 5.9e-58 228.4 235 46.8
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.9e-58 228.4 235 47.2
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.9e-58 228.4 235 47.2
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 5.9e-58 228.4 239 47.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.9e-58 228.4 234 47.9
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.0e-57 227.6 233 48.1
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.0e-57 227.6 235 47.7
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.3e-57 227.3 236 45.3
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.2e-57 226.5 238 48.3
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.9e-57 226.1 232 48.7
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 5.0e-57 225.3 235 46.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 6.5e-57 224.9 231 45.9
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 6.5e-57 224.9 235 47.7
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 6.5e-57 224.9 235 46.8
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 8.5e-57 224.6 232 48.7
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.5e-57 224.6 235 46.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.1e-56 224.2 234 47.0
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.9e-56 223.4 239 47.7
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 4.2e-56 222.2 236 47.5
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 3.6e-55 219.2 239 46.0
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 3.6e-55 219.2 208 54.8
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 4.7e-55 218.8 238 44.5
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.0e-54 216.1 235 46.4
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.4e-53 212.2 238 43.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.1e-51 207.6 237 40.1
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.4e-51 207.2 232 44.0
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 3.1e-51 206.1 238 43.3
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 7.0e-51 204.9 237 41.4
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 7.0e-51 204.9 236 41.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.0e-51 204.9 240 42.5
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 2.0e-50 203.4 235 43.8
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 2.7e-50 203.0 202 53.0
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 5.9e-50 201.8 237 40.9
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 5.9e-50 201.8 239 41.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.9e-49 199.5 205 49.8
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.9e-49 199.5 205 49.8
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 5.0e-49 198.7 205 46.8
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 8.5e-49 198.0 241 40.2
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 8.5e-49 198.0 236 38.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 8.5e-49 198.0 240 40.4
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.2e-48 196.1 240 41.2
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 4.2e-48 195.7 239 40.2
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.1e-47 193.4 238 39.5
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.1e-47 193.4 208 46.6
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.7e-47 193.0 231 42.4
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 3.6e-47 192.6 238 39.5
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.6e-47 192.6 239 39.7
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.0e-46 189.5 239 38.5
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 4.0e-46 189.1 164 56.1
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.0e-46 189.1 240 39.6
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.3e-44 184.1 271 35.4
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.7e-41 173.7 229 40.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.8e-39 166.4 235 37.0
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.0e-38 164.5 230 37.0
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.3e-38 163.3 178 44.9
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 3.0e-38 162.9 237 37.1
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 5.2e-38 162.2 232 37.9
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 6.8e-38 161.8 230 37.0
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.2e-37 161.0 236 37.7
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.7e-34 149.8 234 33.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 4.5e-34 149.1 182 43.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 2.3e-33 146.7 135 51.9
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.1e-32 144.4 230 32.6
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.0e-31 138.3 206 34.5
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.9e-19 100.5 100 55.0
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.2e-19 99.8 207 30.4
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.3e-17 93.6 118 38.1
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.5e-16 90.1 228 28.5
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.6e-15 87.4 204 29.4
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.2e-15 85.5 135 37.0
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.1e-14 84.7 244 25.8
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.0e-09 68.2 104 36.5
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.1e-08 64.7 87 33.3


User provided reference genes

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