Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.1e-164 585.1 820 100.0
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 8.7e-149 532.3 820 96.1
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.3e-93 348.2 819 81.6
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 6.8e-85 320.1 254 65.4
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.9e-82 312.0 254 64.2
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 5.4e-82 310.5 249 65.9
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.2e-81 309.3 254 61.8
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.6e-81 308.9 254 63.8
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 2.1e-81 308.5 243 65.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.3e-80 305.1 251 63.7
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 5.1e-80 303.9 251 63.3
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 3.3e-79 301.2 254 64.6
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.1e-78 298.5 249 62.2
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.7e-78 297.4 255 62.4
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.4e-77 295.8 255 58.4
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 2.3e-77 295.0 241 63.9
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 6.4e-75 287.0 254 59.4
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.2e-73 282.7 249 59.8
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 3.5e-73 281.2 254 57.1
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.3e-72 279.3 254 57.9
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.7e-72 278.9 252 59.1
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 3.9e-72 277.7 249 59.8
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 6.6e-72 276.9 253 57.7
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 8.6e-72 276.6 256 57.0
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.1e-71 276.2 254 57.1
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.3e-71 274.6 232 58.2
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 6.2e-70 270.4 252 59.9
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 8.1e-70 270.0 214 63.1
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.8e-69 268.9 230 62.6
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.5e-68 265.8 267 57.7
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.0e-68 265.4 248 55.2
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 3.4e-68 264.6 255 59.6
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 9.9e-68 263.1 221 62.0
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 9.9e-68 263.1 197 66.5
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.1e-66 259.6 235 57.0
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 1.4e-66 259.2 183 69.9
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 4.2e-66 257.7 178 74.2
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.0e-64 253.1 255 54.9
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.3e-64 251.9 228 55.7
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 3.0e-64 251.5 201 64.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 5.1e-64 250.8 210 61.4
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 8.7e-64 250.0 198 63.1
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 8.7e-64 250.0 244 52.0
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-63 249.2 245 56.3
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.9e-63 248.8 254 52.0
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 2.5e-63 248.4 198 62.1
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.5e-63 248.4 191 64.4
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 3.3e-63 248.1 196 63.3
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 4.3e-63 247.7 246 54.5
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 4.3e-63 247.7 183 68.3
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 5.6e-63 247.3 271 52.4
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.3e-62 246.1 261 52.1
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-62 245.7 184 68.5
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 3.6e-62 244.6 263 52.5
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 4.8e-62 244.2 197 62.4
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.1e-61 243.0 298 49.3
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.4e-61 242.7 174 70.7
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.8e-61 242.3 214 56.5
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 9.0e-61 240.0 203 59.1
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 2.0e-60 238.8 218 58.7
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 2.6e-60 238.4 226 57.1
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 3.4e-60 238.0 248 52.8
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 3.4e-60 238.0 260 53.5
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-60 237.7 152 77.0
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-60 237.7 152 77.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.3e-59 236.1 175 69.7
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 2.2e-59 235.3 246 54.1
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 2.2e-59 235.3 259 51.4
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 4.9e-59 234.2 264 50.4
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 8.4e-59 233.4 262 49.6
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 8.4e-59 233.4 196 61.2
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-58 232.6 204 60.3
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 3.2e-58 231.5 217 57.1
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 4.2e-58 231.1 245 50.2
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.2e-58 231.1 255 48.2
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-57 228.8 204 60.8
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 6.0e-57 227.3 202 58.9
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-56 226.1 201 61.2
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-56 225.3 190 61.1
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 3.9e-56 224.6 255 50.2
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.9e-55 222.2 263 50.2
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 6.9e-53 213.8 220 55.0
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 8.4e-51 206.8 234 53.8
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.4e-50 204.1 185 55.7
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 8.7e-48 196.8 180 56.7
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.5e-47 196.1 120 80.8
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 4.0e-45 188.0 225 49.8
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 2.0e-44 185.7 231 48.9
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.0e-44 185.7 199 50.8
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.6e-44 185.3 125 76.0
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 3.4e-44 184.9 139 63.3
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 5.8e-44 184.1 125 75.2
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.7e-43 182.6 219 50.7
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 2.2e-43 182.2 184 52.2
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 2.2e-43 182.2 184 52.2
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.9e-43 181.8 187 54.0
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.4e-42 179.5 135 68.9
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.9e-42 179.1 235 45.5
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 3.2e-42 178.3 220 50.9
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 2.1e-41 175.6 107 80.4
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 3.5e-41 174.9 213 46.0
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 3.5e-41 174.9 216 46.8
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.0e-41 174.1 184 54.3
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 6.0e-41 174.1 112 76.8
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 7.9e-41 173.7 222 47.7
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 5.1e-40 171.0 153 56.2
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.6e-38 166.0 178 47.8
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 2.1e-38 165.6 213 44.1
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 3.4e-36 158.3 147 53.1
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.0e-35 156.8 214 47.7
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.1e-34 153.3 221 41.6
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 1.1e-34 153.3 212 42.9
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 7.1e-34 150.6 213 41.8
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.2e-33 149.8 138 53.6
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.8e-32 146.0 145 53.8
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 3.9e-32 144.8 128 55.5
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 5.7e-31 141.0 118 55.9
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.6e-30 139.4 147 46.3
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 1.4e-29 136.3 209 40.2
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.6e-28 132.1 187 42.2
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.0e-27 127.9 112 51.8
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 6.5e-27 127.5 207 44.0
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.4e-24 119.8 148 43.2
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 2.0e-23 115.9 146 44.5
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.3e-23 114.8 120 45.0
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.2e-22 112.5 147 41.5
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.0e-20 105.9 124 46.0
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 5.3e-13 81.3 158 39.9
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 4.5e-12 78.2 109 41.3
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 8.0e-09 67.4 43 79.1
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.5e-07 63.2 141 27.7
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.3e-07 62.0 141 28.4
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 3.3e-07 62.0 141 29.1
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 5.7e-07 61.2 151 26.5


User provided reference genes

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