Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.8e-296 1021.1 505 100.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.0e-282 976.1 505 95.4
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.5e-244 848.6 509 82.3
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.0e-242 843.2 509 81.5
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 7.5e-241 837.0 506 83.6
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.7e-240 834.7 505 82.2
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.3e-240 833.6 504 82.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.0e-237 826.6 510 80.8
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.5e-236 822.8 506 81.6
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.5e-236 822.8 511 80.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 5.6e-236 820.8 514 79.8
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 5.6e-236 820.8 512 80.3
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 2.1e-235 818.9 509 78.6
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.8e-234 815.8 509 78.4
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 6.8e-234 813.9 509 80.2
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.5e-233 812.8 509 80.4
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 4.9e-232 807.7 508 78.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 6.4e-232 807.4 510 79.0
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 5.4e-231 804.3 504 79.4
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.2e-230 803.1 509 79.4
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 4.6e-230 801.2 506 77.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.5e-228 796.2 508 77.6
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.2e-227 793.1 503 76.5
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 4.7e-227 791.2 548 72.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.4e-226 789.6 500 77.6
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.3e-226 788.9 511 77.5
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 5.2e-226 787.7 501 77.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 5.2e-226 787.7 501 77.0
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 6.8e-226 787.3 476 80.9
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-225 786.2 500 77.0
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 7.5e-225 783.9 501 76.8
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.3e-224 783.1 507 77.9
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.9e-224 781.9 513 76.8
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-224 781.6 500 76.6
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 4.9e-224 781.2 500 76.6
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 4.9e-224 781.2 502 76.1
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 8.3e-224 780.4 500 76.6
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.9e-223 779.2 504 76.8
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 4.1e-223 778.1 495 76.8
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 9.2e-223 776.9 500 76.4
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.2e-222 776.5 503 75.1
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-222 776.2 500 76.4
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.6e-222 776.2 504 76.2
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 2.1e-222 775.8 504 76.0
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.1e-222 775.8 506 76.5
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.5e-222 775.0 500 76.8
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 6.0e-222 774.2 500 76.6
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 7.8e-222 773.9 508 75.4
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-221 773.1 500 76.4
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.3e-221 773.1 508 75.0
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.0e-221 771.9 498 76.7
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 5.1e-221 771.2 500 76.4
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 8.6e-221 770.4 501 76.4
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-220 769.6 492 78.7
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 3.3e-220 768.5 502 76.5
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 4.3e-220 768.1 506 74.7
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 9.5e-220 766.9 504 76.0
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.2e-219 766.5 500 75.0
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.2e-219 766.5 472 80.7
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.1e-219 765.8 500 76.0
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 6.2e-219 764.2 547 71.1
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 6.2e-219 764.2 502 76.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 8.1e-219 763.8 514 75.1
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.3e-218 762.3 547 70.9
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 3.1e-218 761.9 511 75.1
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 4.0e-218 761.5 476 79.6
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.0e-218 761.5 503 75.1
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 6.8e-218 760.8 500 74.6
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.9e-218 760.4 509 76.6
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.2e-217 760.0 515 73.6
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 5.8e-217 757.7 514 74.5
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.3e-216 756.5 509 74.3
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.7e-216 755.0 512 73.8
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 4.9e-216 754.6 601 66.1
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 6.4e-216 754.2 485 77.1
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.4e-216 754.2 509 76.2
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.4e-215 753.1 512 74.4
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.4e-215 753.1 509 74.1
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 5.4e-215 751.1 509 73.3
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 6.0e-214 747.7 506 73.1
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 5.1e-213 744.6 513 71.0
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 6.6e-213 744.2 513 73.9
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.5e-212 743.0 485 77.9
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 9.6e-212 740.3 506 72.7
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.6e-211 738.4 503 73.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.6e-211 738.4 514 73.5
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 3.1e-210 735.3 509 72.5
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.6e-209 732.3 512 70.9
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.9e-208 728.8 499 74.1
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.4e-208 727.6 499 74.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 4.2e-207 724.9 514 70.2
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 7.1e-207 724.2 509 70.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.2e-206 723.4 503 72.2
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 2.1e-206 722.6 525 68.4
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 3.5e-206 721.8 509 71.5
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.7e-205 717.2 509 73.7
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.5e-204 716.5 509 73.5
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.5e-204 715.7 452 80.8
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.3e-204 714.9 508 71.5
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.6e-203 713.0 567 66.3
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 4.8e-203 711.4 508 69.5
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.3e-202 708.0 534 70.6
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 4.9e-200 701.4 502 69.7
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.4e-199 699.9 454 75.8
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.2e-198 696.8 506 68.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.7e-197 693.0 509 71.5
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 3.9e-197 691.8 495 70.5
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.1e-196 690.3 508 70.9
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.1e-195 686.0 523 68.3
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.8e-194 682.9 587 61.0
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.9e-194 681.0 498 68.1
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 5.8e-193 677.9 448 75.2
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.2e-192 676.0 508 67.5
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.9e-192 675.6 445 75.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 6.4e-192 674.5 509 66.6
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 8.4e-192 674.1 508 68.5
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 6.0e-190 667.9 509 64.4
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.3e-189 666.0 508 67.3
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.9e-188 662.9 467 72.8
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.3e-187 660.2 514 66.9
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.4e-186 656.0 528 65.2
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 5.1e-181 638.3 508 64.4
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.8e-170 603.2 404 73.8
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.3e-168 597.0 399 74.4
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 6.9e-162 574.7 474 65.6
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 3.3e-156 555.8 528 55.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.2e-155 553.1 663 49.8
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 7.7e-153 544.7 541 52.9
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 3.8e-152 542.3 453 64.2
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.5e-140 503.8 416 61.8
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.8e-133 480.3 333 71.2
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.7e-131 473.8 501 53.3
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 6.4e-123 445.3 270 81.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.9e-114 417.2 273 75.1
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.9e-106 390.6 279 71.3
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.4e-90 335.9 212 75.0
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.3e-86 324.7 243 68.3
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 5.3e-85 319.3 268 61.6
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 2.1e-81 307.4 216 72.7
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.3e-79 300.1 267 58.4
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 2.0e-76 290.8 499 40.9
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.3e-64 251.5 563 31.4
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-58 231.9 386 37.0
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.5e-44 184.9 135 67.4
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-42 178.7 184 52.7
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.8e-40 171.4 106 80.2
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.4e-39 166.8 121 71.9
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.7e-38 163.7 112 68.8
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.7e-35 154.8 230 39.1
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.8e-32 144.8 251 40.6
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.2e-32 143.3 251 40.2
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.0e-28 131.3 68 89.7
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-24 118.6 63 90.5
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.5e-18 95.9 166 29.5
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-17 95.5 73 64.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 7.5e-15 86.3 113 46.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.7e-12 77.8 61 67.2
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.1e-10 72.4 212 26.9
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.6e-09 68.6 135 28.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 8.0e-09 66.2 82 47.6
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.3e-08 64.7 87 37.9
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.2e-06 58.2 36 75.0
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-06 56.2 105 39.0


User provided reference genes

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